Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4615g00053 ATGGAGTTGTCGAAGGAAAGTTGCAGCAATGGCAATGGCTCCTTGAACCTTTGCAATGGTAGCAGTGACCCATTGAACTGGGGCATGGCTGCGGAAGCTTTGAAAGGTAGCCACCTTGATGAGGTGAAGCGCATGGTGGAGGAGTATCGGAATCCGGTGGTGATGTTAGGTGGTAAGAGCCTCACCATATCTCAGGTGGCGGCTGTTTCCGCCATAGACAGCCGAATCGCGGTGGAGCTCGCGGAGGAGGCCCGCTCCGGCGTTAAGGCTAGTAGTCAGTGGGTCATTGACAGCATGGACAAAGGCACTGATAGTTATGGGGTCACCACAGGGTTTGGTGCAACCTCACACAGGAGAACAAAACAAGGTGGTGCTCTTCAGAACGAACTCATAAGATTTTTGAATGCTGGCATTTTCGGCAATGGCACAGAATCCTGCCACATGTTACCTCACTCAGCCACAAGGGCAGCCATGCTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATCAGATTTGAAATCATGGAGGCCATAGCCAAATTTCTGAACCATAACATAACCCCATGCCTCCCTCTGAGGGGCACAATCACTGCTTCAGGTGACCTGGTCCCTTTGTCATATGTTGCTGGCCTTTTGATTGGAAGGCCAAACTCCAAGTGTATTGGACCTAATGGACAAGTTCTCAACGCTAAAGAAGCATTTCAACTAGCTGGAATTGATGGTGGTTTCTTTGAATTGCAACCTAAAGAGGGTTTGGCACTAGTGAATGGCACTGCAGTGGGATCAGGCTTGGCTTCCATGGTTCTTTTTGAGGCAAACACACTTGCTATCCTCTCAGAAGTCTTGTCTGCAATTTTCGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACACATAAATTGAAGCACCACCCTGGCCAAATTGAAGCTGCAGCTATAATGGAACATATTTTAGATGGAAGCTCATATGTTAAGGCTGCACAAAAGTTACATGAGATTGATCCACTTCAGAAGCCTAAACAAGATAGGTATGCTCTTCGAACATCACCTCAGTGGCTTGGACCACATATTGAAGTAATCAGACATGCAACAAAGATGATTGAGAGGGAGATAAACTCTGTGAATGACAATCCATTGATTGATGTTTCAAGGAACAAGGCACTTCATGGAGGAAATTTCCAGGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCTTCAATTGGAAAACTTATGTTTGCACAATTCTCTGAGCTTGTAAATGACTTCTACAACAATGGGTTGCCTTCAAATCTAACTGCTAGCCGCGACCCAAGCTTGGATTATGGCTTCAAAGGGGCAGAAATTGCAATGGCATCTTACTGCTCAGAACTTCAATACCTTGCCAATCCTGTCACCAATCATGTTCAGAGTGCAGAACAACATAACCAAGATGTGAACTCTTTGGGCTTGATTTCCTCAAGAAAGACAGCTGAAGCAGTGGATATACTGAAGCTCATGTCCTCCACTTTCTTAGTTGCATTGTGCCAAGCCATTGATCTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTCAAGAATACTGTATGTCAAGTGGCCAAAAGAGTTCTCACAGTTGGTGTCAACGGGGAGTTGCATCCATCCAGGTTCTGTGAGAAGGACTTACTCAAAGTTGTTGACCGTGAGTATGTCTTTGCTTACGTTGATGACCCTTGCAGTGCAACCTACCCTCTAATGCAGAAGCTGAGAGAGGTCCTAGTTGATCATGCATTGCAAAATGGTGATAAAGAGGCCAATTCAAGTACCTCAATATTCCAAAAGATAGGAGCTTTTGAGGAAGAGCTCAAGGCCCTTTTGCCCAAAGAGGTGGAAAGTGCCAGAGTTGAAGTTGAGAATGGAAATCCTGCTATTCCGAACCGTATTAAGGAATGCCGGTCTTACCCTTTATACAAGTTTGTGAGAGAAAATTTGGGTACAACTTTGCTGACAGGTGAGAAAGTTAGGTCACCTGGTGAGGAGTGTGATAAGGTATTCTCTGCATTGTGTGAAGGGAGGTTTATTGACCCCATGTTGGACTGTCTCAAGGAGTGGAATGGTGCTCCTCTACCAATATGCTAG 2145 0.4559 MELSKESCSNGNGSLNLCNGSSDPLNWGMAAEALKGSHLDEVKRMVEEYRNPVVMLGGKSLTISQVAAVSAIDSRIAVELAEEARSGVKASSQWVIDSMDKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESCHMLPHSATRAAMLVRINTLLQGYSGIRFEIMEAIAKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKCIGPNGQVLNAKEAFQLAGIDGGFFELQPKEGLALVNGTAVGSGLASMVLFEANTLAILSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPHIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLTASRDPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTFLVALCQAIDLRHLEENLKSTVKNTVCQVAKRVLTVGVNGELHPSRFCEKDLLKVVDREYVFAYVDDPCSATYPLMQKLREVLVDHALQNGDKEANSSTSIFQKIGAFEEELKALLPKEVESARVEVENGNPAIPNRIKECRSYPLYKFVRENLGTTLLTGEKVRSPGEECDKVFSALCEGRFIDPMLDCLKEWNGAPLPIC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4615g00053 714 FunFam Phenylalanine ammonia-lyase 261 554 - -
Gabi4615g00053 714 CDD PAL-HAL 59 524 IPR001106 -
Gabi4615g00053 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Gabi4615g00053 714 Pfam Aromatic amino acid lyase 61 532 IPR001106 -
Gabi4615g00053 714 NCBIfam phenylalanine ammonia-lyase 23 704 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gabi4615g00053 714 Gene3D - 527 648 IPR023144 -
Gabi4615g00053 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Gabi4615g00053 714 Gene3D - 15 260 IPR024083 -
Gabi4615g00053 714 PANTHER HISTIDINE AMMONIA-LYASE 20 714 IPR001106 -
Gabi4615g00053 714 FunFam Phenylalanine ammonia-lyase 14 260 - -
Gabi4615g00053 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Gabi4615g00053 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4615g00053 Gabi-Chr4615 615264 620171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4615g00053 22 714 Monolignol Biosynthesis Gene Families AT3G53260 83.261 0.0 1234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4615g00053 K10775 - gmx:100818777 1306.58