Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4615g00043 ATGGTAGGACCAAACTTCATGGACGAGATTGACTGCGGAAGCTTCTTCGACCACATCGACGACCTCCTTGATTTCCCTGTTGAGGACGTCGACGGCGCCGCCTCCTCCTTGCCTTCCGTCGCCTCCTCCGCCGCTGCTAACTGCAACTCGCTGGCTAGCATCTGGCCCGCTGAGTCAGAGTCATTTCCCTGCTCCGACTCGGTGTTTTCCGGCAACAGCGCTTCGGGCCTGTCGGCGGAGCTCTCTGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTATCCAATTTTGTGGAGGACTCATTCTCTGGTGGCAGCCTCACCATGAAGAAAGTGGAGCAGCCATCATCATGCACCACAAAGGAGGACTCAGTGCATAACCAATTCCAGACATCAAGCCCAGTTTCTGTCCTGGAAAGCAGCAGTTCCTGCTCCGGTGGGAAGACCACCACCGCTCCTCGCAGCCCTGAGATTCACATCCCCGTGCCATGTGGGCGTGCACGCAGCAAGCGTCCACGCCCTGCAACCTTCAATCCTCGTCCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTTTGTTGGGGAGAACATGCAGCCTAATGTCATCTCAACCAAGGCCTATTCTGATTCTGAGAATTTTGCTGAGTCTCAACCTGTTATCAAGATACCAAAGCAAGCTTGTGGGGAGCCTAAGAAGAAAAAGAAAACCAAAATGCCACTTCCAGTATGTCCAGCTGATAGCAATCAGAATGCTTCACAACCGGCTAGGAAATGTATGCATTGTGAGATAACTAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCATGTGGTGTTCGCTACAAGTCCGGTCGGCTCTTCCCGGAATACCGGCCTGCTGCAAGTCCAACTTTTTGCCCATCCGTGCACTCCAATTCCCATAAGAAGGTCCTGGAAATGAGATGCAAGACTATTGATAATTCTGATTTTGCAACCCATTCAGCTGCCTCACCTGAACTCATTCCAAACACTAACGGCAGCCTGTCCCTGGAATACATGTGA 1059 0.5222 MVGPNFMDEIDCGSFFDHIDDLLDFPVEDVDGAASSLPSVASSAAANCNSLASIWPAESESFPCSDSVFSGNSASGLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEQPSSCTTKEDSVHNQFQTSSPVSVLESSSSCSGGKTTTAPRSPEIHIPVPCGRARSKRPRPATFNPRPAMQLISPASSFVGENMQPNVISTKAYSDSENFAESQPVIKIPKQACGEPKKKKKTKMPLPVCPADSNQNASQPARKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCKTIDNSDFATHSAASPELIPNTNGSLSLEYM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4615g00043 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 315 - -
Gabi4615g00043 352 SMART GATA_3 252 302 IPR000679 GO:0006355|GO:0043565
Gabi4615g00043 352 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Gabi4615g00043 352 CDD ZnF_GATA 257 314 IPR000679 GO:0006355|GO:0043565
Gabi4615g00043 352 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
Gabi4615g00043 352 MobiDBLite consensus disorder prediction 137 181 - -
Gabi4615g00043 352 MobiDBLite consensus disorder prediction 228 249 - -
Gabi4615g00043 352 Gene3D - 252 302 IPR013088 GO:0006355|GO:0008270
Gabi4615g00043 352 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Gabi4615g00043 352 PIRSF Txn_fac_GATA_plant 3 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gabi4615g00043 352 FunFam GATA transcription factor 247 333 - -
Gabi4615g00043 352 MobiDBLite consensus disorder prediction 137 152 - -
Gabi4615g00043 352 PANTHER GATA TRANSCRIPTION FACTOR 16 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4615g00043 Gabi-Chr4615 474227 477694 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4615g00043 19 320 C2C2-Gata Transcription Factor Family AT4G32890 35.032 1.78e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi4615g00043 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4615g00043 - - gmx:100815693 583.563