Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4615g00042 ATGTTTGTGGTTATGGATTCCATGGAGAAGAGCACAGAAAGGTGCTTAGATTCTCAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTCAACACAAAAGTCTTCTACTTTCCTCAGGGCCACGCTGAGCACGCCCATGGGAAAGTAGATTTTGGACAAAACCGTGTTCCACCACTCATCCCTTGCAGGGTCTCTGCTATGAAATACCTTGCTGACCCTGACACAGATGAGGTCTACGTGAAAATGAGGTTGACCCCTTTGAGAGAACATGAATTGGATTTTGAAGATGATTGTTTCATGGGGAACAGTGGAACGGAGGGTCAAGAAAAACCTACCTCCTTTTCCAAGACACTGACACAATCTGATGCCAACAATGGAGGAGGCTTCTCTGTGCCTCGTTACTGTGCAGAGACAATCTTCCCAAAGTTGGATTATTCTGCAGAACCTCCAATCCAAACCATCATTGCTAAGGATGTGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACACCGAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAACCAGAAGAAGCTTGTTGCTGGGGATTCTATTGTGTTTCTGAGGGCAGATAATGGAGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGTGGGATTGAGTTCTCTTCTGGTTGGAACCAGATAGCCCCTATGTTTGGTGGGGGTTCTGGTTTCTTGTGTGGGAATGAGAACAAGTTTGTTAGTAGAAAAGGTGGTGATGAGTTTATGTTAAAAGTGGCAGCTGAATCTGTTGTTGAGGCTGTAACTTGTGCTGTTAATGGCAGGCCTTTTGAGGTTGTGTACTACCCAAGGGCTAGCACCCCTGAGTTTTTTGTTAAGGCTTCTTCTGTGAGGGTTGCAATGCAAACACAATGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATCAGCTGGTTCATGGGAACCATATCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCAGATTCTCCTTGGCGTCTTCTGCAGGTGGTGTGGGATGAACCAGATTTGCTTCAAAATGTCAAGTGTGTAAACCCTTGGTTGGTTGAACTAGTCTCAACCATACCCTCTTTCCATCTCTCTCCATTCTCACCTCCAAGAAAGAAACAACGGTTTCTACAGGACCCATATTTTCACCTCATAAACCAAATTCCTATGCCATCATTCTCCAGCAATCTTCACAATTATACTAACTCTCTATGTAACATTCAAGACAATGATAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTAGGACTAACTCCATCTGATCTTCCCTTCAACAAGCTGCAACCAGACATGCTTTTTGGTGGGTTCTCAAGGCTTGAGGAACATGAAGCCCAACCTGTTACTGTTAGGCCTCCTTGTGGAACCTACAATAGCAGCACTAAGAACAATGTTGATATATCTTGCTTGTTGACTGTGGGAAATCCTGGCCTGAGTTTCAAGGAATCCAATGAAGCTAAAGGACCCCACATCTTGTTATTTGGAAAACTCATTCGCACTGAGCAGAAGAGTTCAAACAATTGCTCTGCTAGTACAACTGCTAATAGTGTATCTGAAGGGACTTCCCTGAAGACATCAAATGCTTCTGATGGCATAGGTTCTGCTTTGAATCAAAATAGTTCAGTTGATAATTCTTCTGATGGAGGGTCTCCCTGGTACAAGGATCAACACAAGTCTGATCTTGGAACCGAAAACGTTAACACATTATGTATGGCTTAA 1818 0.445 MFVVMDSMEKSTERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFGQNRVPPLIPCRVSAMKYLADPDTDEVYVKMRLTPLREHELDFEDDCFMGNSGTEGQEKPTSFSKTLTQSDANNGGGFSVPRYCAETIFPKLDYSAEPPIQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRADNGDLCVGIRRAKKGIGGGIEFSSGWNQIAPMFGGGSGFLCGNENKFVSRKGGDEFMLKVAAESVVEAVTCAVNGRPFEVVYYPRASTPEFFVKASSVRVAMQTQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSTIPSFHLSPFSPPRKKQRFLQDPYFHLINQIPMPSFSSNLHNYTNSLCNIQDNDSSAGIQGARHAQLGLTPSDLPFNKLQPDMLFGGFSRLEEHEAQPVTVRPPCGTYNSSTKNNVDISCLLTVGNPGLSFKESNEAKGPHILLFGKLIRTEQKSSNNCSASTTANSVSEGTSLKTSNASDGIGSALNQNSSVDNSSDGGSPWYKDQHKSDLGTENVNTLCMA 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4615g00042 605 CDD B3_DNA 117 218 IPR003340 GO:0003677
Gabi4615g00042 605 SUPERFAMILY DNA-binding pseudobarrel domain 110 219 IPR015300 -
Gabi4615g00042 605 MobiDBLite consensus disorder prediction 538 585 - -
Gabi4615g00042 605 FunFam Auxin response factor 313 386 - -
Gabi4615g00042 605 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Gabi4615g00042 605 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi4615g00042 605 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Gabi4615g00042 605 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 562 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi4615g00042 605 FunFam Auxin response factor 116 220 - -
Gabi4615g00042 605 Gene3D - 116 220 IPR015300 -
Gabi4615g00042 605 SMART B3_2 118 220 IPR003340 GO:0003677
Gabi4615g00042 605 MobiDBLite consensus disorder prediction 538 592 - -
Gabi4615g00042 605 Gene3D - 313 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4615g00042 Gabi-Chr4615 453229 455842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4615g00042 1 592 B3 DNA Binding Superfamily AT4G30080 56.230 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi4615g00042 B3 2.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4615g00042 - - ccaj:109810654 1016.14