Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4615g00018 ATGGGATATTCCAGATTCTATCTTGTTTTGCTTTTGTCCATTTGTGTGGGAAACTCATTAGCTTCCCCCATAGAAGATCAAGAGAGAGATAGGATTACTCAGCTACCAGGACAACCAAAGAATGTGGGATTTGCTCAGTACTCAGGCTATGTGACTGTGAATGAGGAGAGTGGGAGATCATTGTTTTACTGGTTGACTGAAGCACCAGTGAGTCGAGGACCTGAGTCAAGGCCACTAGTGTTATGGCTTAATGGTGGCCCTGGATGCTCTTCTATTGCTTATGGTGCATCTGAAGAAATGGGCCCTTTTCACATTAGGCCTGATGGGAAGTCACTTTATTTGAATCCTTATGCTTGGAACAATTTGGCAAATATACTATTCCTTGAATCTCCTGCTGGTGTTGGTTTTTCATATTCAAATAAAACGACGGAACTGTATACCTTTGGTGACAAGAGAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGAGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTCAAATTGTTTACCGGAAAAATAAGGGAATCGAGAATCCAGTCATTAATTTTAAGGGAGTTATGGTTGGAAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAGTACTGGTGGACACATGGTTTGGTTTCAGATTCCACATATAGGATGCTGAGAATTGCCTGTGATTTTGGGTCCTCCCAGCATCCATCAGTGCAATGCATGCAGGCTCTCAAAGTTGCAGTTGTGGAGCAGGGAAACATTGATCCATATAGCATTTATACACAGCCTTGTAAAAGTACAGCATCACTCAGACGCGGCTTGAGGGGTCGCTATCCATGGAAGTCTCGAGCATATGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAATCGTCCAGAAGTTCAGAAAGCACTTCATGCCAACGTAACCGGAATTTCTTATCCATGGAAGACATGCAGTGACATTGTAGGGAACTATTGGACTGATTCTCCTCTTTCTATGCTTCCCATATATCGAGAACTTATTAATGCTAGCCTCCAGATATGGCTATACAGTGGAGACACGGATGCTGTGGTTCCAGTGACTGCCACTAGATATTCTATTGATGCGTTGAAGCTACCTACCATCATCAACTGGTACCCTTGGTATGATAATGGCAAGGTTGGTGGGTGGAGTCAAGTTTATAAAGGGCTCACATTTGTTACAGTAAGAGGAGCTGGACATGAGGTTCCACTTCATAGGCCTCGCCAAGCATTTATTCTTTTTAGGTCATTCTTGGAGAACAAGTCCATGCCATCTACAAGTTAG 1377 0.4205 MGYSRFYLVLLLSICVGNSLASPIEDQERDRITQLPGQPKNVGFAQYSGYVTVNEESGRSLFYWLTEAPVSRGPESRPLVLWLNGGPGCSSIAYGASEEMGPFHIRPDGKSLYLNPYAWNNLANILFLESPAGVGFSYSNKTTELYTFGDKRTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAQIVYRKNKGIENPVINFKGVMVGNAVTDDYHDYVGTFEYWWTHGLVSDSTYRMLRIACDFGSSQHPSVQCMQALKVAVVEQGNIDPYSIYTQPCKSTASLRRGLRGRYPWKSRAYDPCTERYSDLYFNRPEVQKALHANVTGISYPWKTCSDIVGNYWTDSPLSMLPIYRELINASLQIWLYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDNGKVGGWSQVYKGLTFVTVRGAGHEVPLHRPRQAFILFRSFLENKSMPSTS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4615g00018 458 Gene3D - 310 346 - -
Gabi4615g00018 458 FunFam Carboxypeptidase 26 288 - -
Gabi4615g00018 458 Gene3D alpha/beta hydrolase 26 288 IPR029058 -
Gabi4615g00018 458 ProSitePatterns Serine carboxypeptidases, serine active site. 178 185 IPR018202 GO:0004185
Gabi4615g00018 458 ProSitePatterns Serine carboxypeptidases, histidine active site. 421 438 IPR033124 GO:0004185
Gabi4615g00018 458 FunFam Carboxypeptidase 357 451 - -
Gabi4615g00018 458 Pfam Serine carboxypeptidase 36 451 IPR001563 GO:0004185|GO:0006508
Gabi4615g00018 458 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 438 IPR001563 GO:0004185|GO:0006508
Gabi4615g00018 458 FunFam Carboxypeptidase 307 454 - -
Gabi4615g00018 458 Gene3D - 357 450 - -
Gabi4615g00018 458 SUPERFAMILY alpha/beta-Hydrolases 27 454 IPR029058 -
Gabi4615g00018 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 421 434 IPR001563 GO:0004185|GO:0006508
Gabi4615g00018 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Gabi4615g00018 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Gabi4615g00018 458 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 189 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4615g00018 Gabi-Chr4615 153951 158677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4615g00018 320 454 Calmodulin-binding Proteins AT2G22960 27.941 1.01e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4615g00018 K16297 - gmx:100812000 891.723