Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4612g00003 ATGAACAACAGTGTTCCTGATTGGAATTTTGAGAGTGATACCTTGATCACCAATCAAAAGAAGAATACGGGGTTGGACCAAGAACTTGTAGAACTCCTATGGCAAAATGGCCAGGTAGTATTGCACAGCCAAACACATAGGAAACCAGTTGTGGATTCATTCACTTCAAGACAGGTTCAGAAAAATTTTCAATCAACACTGAAGACTAATGAGCCATTTGCAAACTCGAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCTTTGGAACAAGAATTCTGTTCAAACCTTTTATCTGAAATGCCACCTTCTGAAGTTGAGTCTTATAAGCAAATCAGGCAATTTGAAGAGGGAAAGTTTTCCAAATTGGAAGCTTCTAGTGCTCCCCACCATGTTCCTGTAAGTTCACAATCACCTAATATGAAACCCTCTGGTGTTCATGAATTCTCAGGAATTCCTATGCCTGCCCCAAGATTCCATGTTTCTGATTCATCTCAGAAAAACAATAACTTGGGTGGATCACACAAGGTCCTAAACTTTTCTCACTTTTCAGCACCCCCCAATGTTTCTTCAGCATCTGCTAATGCACATTTAAGAGACAAAATTACTGGTAATAATATGCCAAAAAGTGAAATTAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTTATTGTGGTAGCAATCAAATCCCCCAAGACCCAGATGTAAGCCGGGCATCGAGCAATGGGGGTTGGACTACTACTTTAACAGCCGAACCTGAAGCTGTAAGAGATGATGGTCAAAGAACACTTCCTCAGAATGAGAAAGGGAAATCAGATATGCTTGAACCAACTATGACTTCATCTTCTGGTGGCTCTGGCAGTAGTCTTGGAAAAACTTGTTCTCTATCTACAAGAAACCAGGGCCAAAAAAGGAAAGGGATAGATGTAGAAGACTCAGAGGAACAAAGTGAGGACACAGAACTCAAATCTGCAGTTCGAAACAAGGCATCTCAACGGGCAGGATCGGCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTGTCAGAAAGGAGACGAAGAGATAGGATCAATGAAAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAAGCAATCGAATACTTGAAATCTCTTCAGTTACAACTTCAGGTTATGTGGATGGGATCTGGCATGGCACCAGTGATGTTTCCAGGAATTCAGCACTATATGACACAAATGGACACCAAACCAGACATCAATGTGCCAAACTCCTATTTTGGGTGCCTTTAA 1329 0.4161 MNNSVPDWNFESDTLITNQKKNTGLDQELVELLWQNGQVVLHSQTHRKPVVDSFTSRQVQKNFQSTLKTNEPFANSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSEMPPSEVESYKQIRQFEEGKFSKLEASSAPHHVPVSSQSPNMKPSGVHEFSGIPMPAPRFHVSDSSQKNNNLGGSHKVLNFSHFSAPPNVSSASANAHLRDKITGNNMPKSEIRECSVMTVGSSYCGSNQIPQDPDVSRASSNGGWTTTLTAEPEAVRDDGQRTLPQNEKGKSDMLEPTMTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEDSEEQSEDTELKSAVRNKASQRAGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSNKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPVMFPGIQHYMTQMDTKPDINVPNSYFGCL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4612g00003 442 PANTHER TRANSCRIPTION FACTOR PIF3 19 427 IPR044273 GO:0003700|GO:0006355
Gabi4612g00003 442 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Gabi4612g00003 442 Coils Coil 355 375 - -
Gabi4612g00003 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Gabi4612g00003 442 Gene3D - 344 405 IPR036638 GO:0046983
Gabi4612g00003 442 MobiDBLite consensus disorder prediction 234 257 - -
Gabi4612g00003 442 CDD bHLH_AtPIF_like 349 412 IPR047265 -
Gabi4612g00003 442 SMART finulus 355 404 IPR011598 GO:0046983
Gabi4612g00003 442 MobiDBLite consensus disorder prediction 234 352 - -
Gabi4612g00003 442 MobiDBLite consensus disorder prediction 281 311 - -
Gabi4612g00003 442 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
Gabi4612g00003 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 411 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4612g00003 Gabi-Chr4612 64146 67337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4612g00003 8 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 37.292 5.36e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi4612g00003 HLH 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4612g00003 K16189 - gmx:100784531 661.373