Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4610g00002 ATGAGTTCTCGGACAGTGAGGAGTTACCGGCGTAGGAAGACGAATTTGGAGTTGGACCTTAACCGTGTCCCTGATGAAGAGAGTCGAGAGGAGGAACAGGAGCCACCTTCCACTCAACTTGTTCCCATGATTGATGTTGACGCCATTGATGATGATGATGTTGTTGAGTCCTCTCCCAGGGCTTTTGCTCTGGCCAGAAACAATTCGAGGAGAATTCGCGAGAGGACTGTAGTTGATGTGGAGGATTCAGAAGATCGGGCTAGGGTTGGTCGCAAGCATGACAGATGCAGAGAACCACTCAAAATGCCAACATTTTTTCATTGTGGTCCTCGTGGGAATTTGGAAGGCAGTAGCAGTTCTGTGAAGATAAATGCTAGAAAGTCACCTGAACCACCTCCACCTGCGAAGGAGCCAGTCTTTAACTGTCCAATATGTATGGGTCCTTTGAAAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGCATTGCATTAAAGCTGCAATAGCTTCACAGGGTAAATGCCCTACCTGTAGAAAAAAGGTTACTGTAAGAGAGCTGATAAGGGTCTTTCTTCCATCAGCTAGTTGA 594 0.4596 MSSRTVRSYRRRKTNLELDLNRVPDEESREEEQEPPSTQLVPMIDVDAIDDDDVVESSPRAFALARNNSRRIRERTVVDVEDSEDRARVGRKHDRCREPLKMPTFFHCGPRGNLEGSSSSVKINARKSPEPPPPAKEPVFNCPICMGPLKEEMSTRCGHIFCKHCIKAAIASQGKCPTCRKKVTVRELIRVFLPSAS 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4610g00002 197 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
Gabi4610g00002 197 SUPERFAMILY RING/U-box 137 192 - -
Gabi4610g00002 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 195 IPR013083 -
Gabi4610g00002 197 PANTHER ELFLESS, ISOFORM B 3 195 - -
Gabi4610g00002 197 ProSitePatterns Zinc finger RING-type signature. 157 166 IPR017907 -
Gabi4610g00002 197 Pfam Zinc finger, C3HC4 type (RING finger) 141 179 - -
Gabi4610g00002 197 SMART ring_2 142 179 IPR001841 -
Gabi4610g00002 197 MobiDBLite consensus disorder prediction 10 29 - -
Gabi4610g00002 197 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4610g00002 Gabi-Chr4610 16500 22310 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4610g00002 1 195 C3H Transcription Factor Family AT3G07200 43.781 7.07e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4610g00002 K22651 - gmx:100306616 207.223