Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4610g00001 ATGAGTTCTCGGACAGTGAGGAGTTACCGGCGTAGGAAGACGAATTTGGAGTTGGACCTTAACCGTGTCCCTGATGAAGAGAGTCGAGAGGAGGAACAGGAGCCACCTTCCACTCAACTTGTTCCCATGATTGATGTTGACGCCATTGATGATGATGATGTTGCCAGAAACAATTCGAGGAGAATTCGCGAGAGGACTGTAGTTGATGTGGAGGATTCAGAAGATCGGGCTAGGGTTGGTCGCAAGCATGACAGATGCAGAGAACCACTCAAAATGCCAACATTTTTTCATTGTGGTCCTCGTGGGAATTTGGAAGGCAGTAGCAGTTCTGTGAAGATAAATGCTAGAAAGTCACCTGAACCACCTCCACCTGCGAAGGAGCCAGTCTTTAACTGTCCAATATGTATGGGTCCTTTGAAAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGCATTGCATTAAAGCTGCAATAGCTTCACAGGGTAAATGCCCTACCTGTAGAAAAAAGGTTACTGTAAGAGAGCTGATAAGGGTCTTTCTTCCATCAGCTAGTTGA 564 0.4539 MSSRTVRSYRRRKTNLELDLNRVPDEESREEEQEPPSTQLVPMIDVDAIDDDDVARNNSRRIRERTVVDVEDSEDRARVGRKHDRCREPLKMPTFFHCGPRGNLEGSSSSVKINARKSPEPPPPAKEPVFNCPICMGPLKEEMSTRCGHIFCKHCIKAAIASQGKCPTCRKKVTVRELIRVFLPSAS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4610g00001 187 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Gabi4610g00001 187 ProSiteProfiles Zinc finger RING-type profile. 132 170 IPR001841 -
Gabi4610g00001 187 MobiDBLite consensus disorder prediction 1 45 - -
Gabi4610g00001 187 PANTHER ELFLESS, ISOFORM B 3 185 - -
Gabi4610g00001 187 Pfam Zinc finger, C3HC4 type (RING finger) 131 169 - -
Gabi4610g00001 187 MobiDBLite consensus disorder prediction 10 29 - -
Gabi4610g00001 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 185 IPR013083 -
Gabi4610g00001 187 SMART ring_2 132 169 IPR001841 -
Gabi4610g00001 187 SUPERFAMILY RING/U-box 127 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4610g00001 Gabi-Chr4610 16500 22310 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4610g00001 1 185 C3H Transcription Factor Family AT3G07200 40.796 8.24e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4610g00001 K22651 - gmx:100306616 190.66