Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4608g00010 ATGTTAGGGGAAGAAGGGAAGAAGGACAAGCCCTCCGGTTGGAGAACATATTCTCGTTCAGTTTCGTGGACTGACCGGTCTCCGGTTAACCGTAAACCACCGGCAACTGCAAATAGCAAACCAAGATCATTGTTGCCACCCCTTCAGCCTCTCTCAATCAACAAGCGTAGTGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCCCTTCCACAAACTCCAAGAGGGTCCATCAGAGCCTATGATTCAAGTCAACCCACCAAGGATTTTCAGTTCAAGAGGGACAAATTGGCCTTCTTTGATAAAGAGTGTTCCAGAATTGCTGAGCATATATACTTGGGGAGTGATACAGTGGCCAAGAATCATGAACTTCTGAGACAAAATGGAATAACTCACGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAAGAGATTTTGTGTACAAGACACTTTGGTTGCAGGATAGTCCAACGGAGGATATCACGAGTATTCTATATGATGTGTTTGATTACTTTGAAGATGTTCGAGAGCAAGGTGGTCGTGTCCTTGTCCATTGTTGTCAAGGGGTTTCTCGATCAACAGCTCTTGTAATTGCTTATCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCGAGGGCAGTGACAAATCCAAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGGGTACATGCTATGCCTGCTAGTCCTAATTCTATTCTTAGGATGTACCGTATGGCTCCTCACTCACCCTATGACCCTCTTCATCTGGTTCCTAAAATGGTAAACCAGCCATGTGCACAAGCACTTGATTCTCGTGGGGCTTTCATTATCCATGTTCCTTCTGCTATTTATGTATGGAATGGAAAGCATTGTAACTCGGTGATGTCATGCAATGCAAGGGGTGCAGCTTTTCAGGTCATCCGTTATGAGAGGGCAAAGGGTCCAATTTTGAGCATCCACGAAGATGAGGAACCACCAGGGTTTTGGATTGCTCTTTCTGATGAGCAACGCTTATCAAGTAATTCTAACAAAGAAGGGGTCATGGAGGAACCAGTGTTGTTGTTGCCTTCTGAAAACATGGAGATTTCTGATGCAGTTATGGAGATTAGTCCAAGAAAAATTGATGCATATGATTTGGATTTTGAGATTTTCGACAAGGCACTTGATGGTGGGGTTGTTCCACCTTGTTCTGTATCTAATGCGGAATCAGAAACTTGCCTTCCTGCTAGAGAACATGGTTGGGGAAGACTGAGGAGGAAGTTTGCTAGTGGTGGCATGAAAAGATTGCTTGCATCTCCCAAATGGAAATGTGGTGCAACCTCATGCAATGATCAATCCAGTGTAATTTTGGAAGAAGAGAACCAACATTCTGTAACTGATACTTTGTCACCATCATTCAATCATCCCTGTGGTTCACCTGATTCCTTTGAATGTTCTCCAAATAACAGCTTAGGCAGGCCATCACCATCTGGCCTGGAATCAACTGAACCCTTTTATGTTAAAGATGCATCTTTCTCAGAAGGTTCCTCTTTAGTTGAAAAAGAAGTTGTCTCTTCACCTTCAGAGACATTTTCAGTTAATCACACCTTGGGAGGTGCAAACTCCTATTTGCCATTGAAAGGGTCTTCTCTCTCCATTGCAGAGCGCAGAGGGAGTTATCTACCACCTCGGATGTTGTTATCCTCTGTCAATGAATCCTCTCACGTACACAAGAACCTGGTAAGATCACAGTCATTCTCTTTGCCTGACTTAGATGATAATGTGATGAGGGATGATAGTTGCAAACAATCTGAACATGAAAACAATGGGAAATAG 1869 0.4361 MLGEEGKKDKPSGWRTYSRSVSWTDRSPVNRKPPATANSKPRSLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYDSSQPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCAQALDSRGAFIIHVPSAIYVWNGKHCNSVMSCNARGAAFQVIRYERAKGPILSIHEDEEPPGFWIALSDEQRLSSNSNKEGVMEEPVLLLPSENMEISDAVMEISPRKIDAYDLDFEIFDKALDGGVVPPCSVSNAESETCLPAREHGWGRLRRKFASGGMKRLLASPKWKCGATSCNDQSSVILEEENQHSVTDTLSPSFNHPCGSPDSFECSPNNSLGRPSPSGLESTEPFYVKDASFSEGSSLVEKEVVSSPSETFSVNHTLGGANSYLPLKGSSLSIAERRGSYLPPRMLLSSVNESSHVHKNLVRSQSFSLPDLDDNVMRDDSCKQSEHENNGK 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4608g00010 622 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 227 IPR000387 GO:0016311|GO:0016791
Gabi4608g00010 622 Pfam Dual specificity phosphatase, catalytic domain 115 245 IPR000340 GO:0008138|GO:0016311
Gabi4608g00010 622 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 249 IPR029021 -
Gabi4608g00010 622 SUPERFAMILY Actin depolymerizing proteins 253 352 - -
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 15 45 - -
Gabi4608g00010 622 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 249 IPR020422 GO:0006470|GO:0008138
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 489 513 - -
Gabi4608g00010 622 CDD DSP 108 242 - -
Gabi4608g00010 622 PANTHER MKPA PROTEIN 8 604 - -
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 603 622 - -
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 1 51 - -
Gabi4608g00010 622 Gene3D Protein tyrosine phosphatase superfamily 84 249 IPR029021 -
Gabi4608g00010 622 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 489 508 - -
Gabi4608g00010 622 MobiDBLite consensus disorder prediction 598 622 - -
Gabi4608g00010 622 Gene3D Severin 259 358 IPR029006 -
Gabi4608g00010 622 SMART dsp_5 107 246 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4608g00010 Gabi-Chr4608 69050 71656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4608g00010 33 143 Protein tyrosine phosphatase (PTP) family AT3G55270 52.066 4.11e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4608g00010 - - lja:Lj6g3v0574850.1 917.916