Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4608g00009 ATGTTAGGGGAAGAAGGGAAGAAGGACAAGCCCTCCGGTTGGAGAACATATTCTCGTTCAGTTTCGTGGACTGACCGGTCTCCGGTTAACCGTAAACCACCGGCAACTGCAAATAGCAAACCAAGATCATTGTTGCCACCCCTTCAGCCTCTCTCAATCAACAAGCGTAGTGTGGAGGAATGGCCTAGTGCTGGATCTGATGATCTTGGAGTTTGGCCCCTTCCACAAACTCCAAGAGGGTCCATCAGAGCCTATGATTCAAGTCAACCCACCAAGGATTTTCAGTTCAAGAGGGACAAATTGGCCTTCTTTGATAAAGAGTGTTCCAGAATTGCTGAGCATATATACTTGGGGAGTGATACAGTGGCCAAGAATCATGAACTTCTGAGACAAAATGGAATAACTCACGTGCTCAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAAGAGATTTTGTGTACAAGACACTTTGGTTGCAGGATAGTCCAACGGAGGATATCACGAGTATTCTATATGATGTGTTTGATTACTTTGAAGATGTTCGAGAGCAAGGTGGTCGTGTCCTTGTCCATTGTTGTCAAGGGGTTTCTCGATCAACAGCTCTTGTAATTGCTTATCTCATGTGGAGGGAGGGACAAAGCTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCGAGGGCAGTGACAAATCCAAACATGGGTTTTGCTTGTCAACTTTTGCAGTGTCAGAAACGGGTACATGCTATGCCTGCTAGTCCTAATTCTATTCTTAGGATGTACCGTATGGCTCCTCACTCACCCTATGACCCTCTTCATCTGGTTCCTAAAATGGTAAACCAGCCATGTGCACAAGCACTTGATTCTCGTGGGGCTTTCATTATCCATGTTCCTTCTGCTATTTATGTATGGAATGGAAAGCATTGTAACTCGGTGATGTCATGCAATGCAAGGGGTGCAGCTTTTCAGGTCATCCGTTATGAGAGGGCAAAGGGTCCAATTTTGAGCATCCACGAAGATGAGGAACCACCAGGGTTTTGGATTGCTCTTTCTGATGAGCAACGCTTATCAAGTAATTCTAACAAAGAAGGGGTCATGGAGGAACCAGTGTTGTTGTTGCCTTCTGAAAACATGGAGATTTCTGATGCAGTTATGGAGATTAGTCCAAGAAAAATTGATGCATATGATTTGGATTTTGAGATTTTCGACAAGGCACTTGATGGTGGGGTTGTTCCACCTTGTTCTGTATCTAATGCGGAATCAGAAACTTGCCTTCCTGCTAGAGAACATGGTTGGGGAAGACTGAGGAGGAAGTTTGCTAGTGGTGGCATGAAAAGATTGCTTGCATCTCCCAAATGGAAATGTGGTGCAACCTCATGCAATGATCAATCCAGTGTAATTTTGGAAGAAGAGAACCAACATTCTGTAACTGATACTTTGTCACCATCATTCAATCATCCCTGTGGTTCACCTGATTCCTTTGAATGTTCTCCAAATAACAGCTTAGGCAGGGTAAAAGATACTCTTGCTTCATCATTGCCACCATCTCCTCTTGGCACATTAAATCCTTTTCCTCGTTTTCTATGCAGCAACAATTCAAAATTCAATTGCAAGTCACCAACACTTTCACCTTCAAGTTCTGATTACACAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCCGACTTGTCATTTGTGTCTTCTCGGCAGCCATCACCATCTGGCCTGGAATCAACTGAACCCTTTTATGTTAAAGATGCATCTTTCTCAGAAGGTTCCTCTTTAGTTGAAAAAGAAGTTGTCTCTTCACCTTCAGAGACATTTTCAGTTAATCACACCTTGGGAGGTGCAAACTCCTATTTGCCATTGAAAGGGTCTTCTCTCTCCATTGCAGAGCGCAGAGGGAGTTATCTACCACCTCGGATGTTGTTATCCTCTGTCAATGAATCCTCTCACGTACACAAGAACCTGGAGGACTGCACCTAA 1992 0.4357 MLGEEGKKDKPSGWRTYSRSVSWTDRSPVNRKPPATANSKPRSLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSIRAYDSSQPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKRDFVYKTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWREGQSFEDAFQFVKTARAVTNPNMGFACQLLQCQKRVHAMPASPNSILRMYRMAPHSPYDPLHLVPKMVNQPCAQALDSRGAFIIHVPSAIYVWNGKHCNSVMSCNARGAAFQVIRYERAKGPILSIHEDEEPPGFWIALSDEQRLSSNSNKEGVMEEPVLLLPSENMEISDAVMEISPRKIDAYDLDFEIFDKALDGGVVPPCSVSNAESETCLPAREHGWGRLRRKFASGGMKRLLASPKWKCGATSCNDQSSVILEEENQHSVTDTLSPSFNHPCGSPDSFECSPNNSLGRVKDTLASSLPPSPLGTLNPFPRFLCSNNSKFNCKSPTLSPSSSDYTSSFTFSPSSTNWSDLSFVSSRQPSPSGLESTEPFYVKDASFSEGSSLVEKEVVSSPSETFSVNHTLGGANSYLPLKGSSLSIAERRGSYLPPRMLLSSVNESSHVHKNLEDCT 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4608g00009 663 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 249 IPR029021 -
Gabi4608g00009 663 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 166 227 IPR000387 GO:0016311|GO:0016791
Gabi4608g00009 663 MobiDBLite consensus disorder prediction 15 45 - -
Gabi4608g00009 663 Gene3D Protein tyrosine phosphatase superfamily 84 249 IPR029021 -
Gabi4608g00009 663 ProSiteProfiles Dual specificity protein phosphatase domain profile. 107 249 IPR020422 GO:0006470|GO:0008138
Gabi4608g00009 663 Gene3D Severin 259 358 IPR029006 -
Gabi4608g00009 663 CDD DSP 108 242 - -
Gabi4608g00009 663 MobiDBLite consensus disorder prediction 1 51 - -
Gabi4608g00009 663 ProSitePatterns Tyrosine specific protein phosphatases active site. 191 201 IPR016130 GO:0016311|GO:0016791
Gabi4608g00009 663 SUPERFAMILY Actin depolymerizing proteins 253 352 - -
Gabi4608g00009 663 PANTHER MKPA PROTEIN 8 658 - -
Gabi4608g00009 663 SMART dsp_5 107 246 IPR020422 GO:0006470|GO:0008138
Gabi4608g00009 663 Pfam Dual specificity phosphatase, catalytic domain 115 245 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4608g00009 Gabi-Chr4608 69050 72352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4608g00009 33 143 Protein tyrosine phosphatase (PTP) family AT3G55270 52.066 4.40e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4608g00009 - - lja:Lj6g3v0574850.1 998.423