Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4608g00006 ATGGAGATGAACTGTGGTATGGAGTTTTCAATGGATCGACGTCCCCGGAAAAGGGCTAAATTGGCTTGGGATCTTCCTCAAACCCACTCGAAGGTTCATTCTGGGATGTATTGTGGACAAGAGGTTGCAAATGTGACAAGCATCTTTGGAATGCCGAGGGTACTTCCTGATCATGCTGGTCTTTTTGTAAAGGGAGTGGCTGATAAAGGTTCTCCCCCATGGCGAGATGATGACAAAGATGGACATTACATGTTTGCGCTAGGAGACAATTTAACTTCTCGGTATAAGATCCTCAGGAAAATTGGTGAAGGGACTTTTGGTCAGGTTTTGGAATGTTGGGATAGAGAAATGAGGGAGCTGGTTGCGGTAAAGGTTGTGCGGAGTATTAGGAAATATCGTGAAGCGGCAATGTTAGAAGTTGATGTGCTCCAGTTGCTTGGGAAGTATGACAGGAGTGGCAGCCGCTGTGTTCAAATACGGAATTGGTTTGACTACCGTAACCATATTTGTATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTACGGAAGAACAATTATTGCCCATTTCCGGTTGATCTTGTCCGTGAGCTAGGCAGACAACTGTTAGAATGTGTAGCATTCATGCATGATTTGCGCCTCATCCACACTGACTTGAAGCCTGAAAATATACTTTTTATTTCCCCAGAATATGTAAAAGTTCCTGACTCCAACTCCAAGGGAACCACTTATAAGAGACTGCCAAAGTCAAGTGCTATTAAGGTTATTGATTTTGGTAGTACAGCCTATGAGCACCAAGATCACAACTATATTGTCTCTACTAGGCATTATCGTGCACCTGAGGTTATTCTTGGTCTTGGGTGGAATTTTCCTTGTGACATATGGAGTGTTGGCTGCATTTTGGTTGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTAGAGCACCTAGCCATGATGGAGAGGGTTTTAGGCCCAATACCTCAGCACATGTTGAAAAGAGCAGACCGGCAAGCACAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCCGGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCTGTCTTGAAACTACCTCGTCTTCCTAATCTGGTGATGCAGCACGTGGATCACTCTGCTGGGGATCTTCTTGATCTCTTGCAGGGTCTGCTTAGGTTTGACCCCTCAAGTAGGCTGAAGGCTCATGAAGCCCTCAGGCATCCCTTCTTGACTGGGGAACATTACCAAAGATTTTAA 1275 0.4494 MEMNCGMEFSMDRRPRKRAKLAWDLPQTHSKVHSGMYCGQEVANVTSIFGMPRVLPDHAGLFVKGVADKGSPPWRDDDKDGHYMFALGDNLTSRYKILRKIGEGTFGQVLECWDREMRELVAVKVVRSIRKYREAAMLEVDVLQLLGKYDRSGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYCPFPVDLVRELGRQLLECVAFMHDLRLIHTDLKPENILFISPEYVKVPDSNSKGTTYKRLPKSSAIKVIDFGSTAYEHQDHNYIVSTRHYRAPEVILGLGWNFPCDIWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPIPQHMLKRADRQAQKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPSSRLKAHEALRHPFLTGEHYQRF 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4608g00006 424 SMART serkin_6 95 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4608g00006 424 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
Gabi4608g00006 424 ProSitePatterns Protein kinases ATP-binding region signature. 101 131 IPR017441 GO:0005524
Gabi4608g00006 424 Pfam Protein kinase domain 95 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4608g00006 424 SUPERFAMILY Protein kinase-like (PK-like) 82 420 IPR011009 -
Gabi4608g00006 424 FunFam Serine/threonine-protein kinase AFC2 171 416 - -
Gabi4608g00006 424 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 11 419 - -
Gabi4608g00006 424 Gene3D Transferase(Phosphotransferase) domain 1 149 416 - -
Gabi4608g00006 424 ProSiteProfiles Protein kinase domain profile. 95 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4608g00006 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Gabi4608g00006 424 CDD PKc_CLK 82 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4608g00006 Gabi-Chr4608 59194 63411 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4608g00006 80 420 MAP Kinase Gene Family AT3G59790 27.577 1.87e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi4608g00006 Pkinase 7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4608g00006 K08287 - cave:132178767 739.184