Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4605g00001 ATGGCAGAACCATCCACCGCCGAAACCACCTCCGCCAGCGATGCTCATCCGCCGGCGCCAGCTTCCTCGTCGCTCAACGTCCTCGGATTAACGATTGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCGGCGACACTCCGTACACGTCAGCTACCACCTTCGAAGAACTGAATCTCTCACCGGAGCTTTTGAACGGACTCTACGTGGAGATGAAGTTCCATAAACCTAGTAAGATCCAAGCCGTAACCTTGCCTATGATCTTGAATCCTCCGAATAGGGATTTGGTCGCACACGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATTTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACATGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGTGATGCTTTGCCGATAGCGAAACGGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTCAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTCAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAATGAGAAAAGATTACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTGTCGCTCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGATATTCCTGCCGAGGAGCTTGCTAGGAGGACTGGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTCTGCACCTGAAGTTATTCCTCCTAAACCAACGTATTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAACGATTAGGGTGGAGCCGACTGAGTCTGGTCAATCAGGTGGTAGTCTCTCGTTTGCCATGGAGAGTTTCTCGGACGCCCCTGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAACCCGGGAGGCTACTCTTGCTATTGACAACCGTTGTTCTACCCAGCATGATGACTTGGTACAGAAAGGGCGCAAGATTGAGTCCTTAACGGCCGAGATCAGGCGGTTGGGTAAGGAAATTAGTGACCTGAAGGCAACCAATAAAACTTTATCTGACAGCAACCAAGAACTGAAGGGGGCTAGTGACGTGGTGCAACGCCTATCGCAGGAGAATGATGATAATCTTGATAATCTTATTCTAAGTAATCTTGCTTGA 1749 0.4654 MAEPSTAETTSASDAHPPAPASSSLNVLGLTIDENKKPSPKFLDEPEDSNIQAVSSGDTPYTSATTFEELNLSPELLNGLYVEMKFHKPSKIQAVTLPMILNPPNRDLVAHAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYMGISSECAIPADSSDALPIAKRAPIMAQVVIGTPGTINKWMAYKKLGVTRLKILVFDEADQMLAQDGFKDDSLRIMKGIEKVNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEMRKDYILEIGENLGQTIIFVRTRNSAKMLHKSLVEIGENLGQTIIFVRTRNSAKMLHKSLVVAVAPVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTGGPVIKDVQENAQSLAVNPSAPEVIPPKPTYSGRKRVASEDLSSPKGAKTIRVEPTESGQSGGSLSFAMESFSDAPVVAPVAPSKGVDKGTREATLAIDNRCSTQHDDLVQKGRKIESLTAEIRRLGKEISDLKATNKTLSDSNQELKGASDVVQRLSQENDDNLDNLILSNLA 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4605g00001 582 SMART ultradead3 85 289 IPR014001 -
Gabi4605g00001 582 Coils Coil 548 568 - -
Gabi4605g00001 582 MobiDBLite consensus disorder prediction 1 59 - -
Gabi4605g00001 582 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676|GO:0005524
Gabi4605g00001 582 Coils Coil 517 544 - -
Gabi4605g00001 582 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 94 IPR014014 GO:0003724
Gabi4605g00001 582 MobiDBLite consensus disorder prediction 421 470 - -
Gabi4605g00001 582 Gene3D - 44 279 IPR027417 -
Gabi4605g00001 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 270 IPR027417 -
Gabi4605g00001 582 CDD DEADc_DDX19_DDX25 72 271 - -
Gabi4605g00001 582 PANTHER RNA HELICASE 53 334 - -
Gabi4605g00001 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 99 275 IPR014001 -
Gabi4605g00001 582 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4605g00001 Gabi-Chr4605 2847 7955 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4605g00001 58 330 Eukaryotic Initiation Factors Gene Family AT1G72730 32.632 1.27e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4605g00001 K18655 - qsa:O6P43_010208 494.967