Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4604g00007 ATGAGAGAAATTTGTAGAAACTTCCAGCGAGGCAGCTGTCAATACGGAGAAAGGTGTAGATATCTTCATGTAAACCAACAACAGCAAAAATCTAATGTTAATGGGTTTGGAGGACCGAGCAGTTCTCACCAACAGCATAATACAAATCCCTTTGGATTTGGGACTCAAGCTGGCTCTGGCTCACACCAACAGCAGAATACCAATCCTTTTGGTTTTGGCGTGCAGAACAGCTCCCAATTGAATGGAACCCCTCGTTCTGAGTTCAAAACAAACCAATTCAAGCCTTTTGAAAACAAATGGAATCGACATTCATCCAATCCCCAGAGTGGCGCCTCGCGTCAATCTGATAACCATTCCCAACCGGTAAATCATTCATGCACAGATCCCGAGAACTGCAAGCGCCAGATTGCAGAAGATTTTCAGCAAGAGAAACCACTTTGGATTCTTACGTGCTACAGTCATTGCAAGGGGGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGACAGCAGCTTATGAGGATGCTAAGAAAGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAGTATACTAAAATCCAAGTTTGTTGAGTTTGAGAAACTGCTTTCTGAACCCTACCGACTACCACTGAATTCTTCTCTTGAGAGTCAGAAGCATCAATCTATTGGAGTCAATGCAAATCCATTTTCTACAACTACTCAAAATAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCATTGAATATGGGTTCTGAAAGGCCCTCTGCACCACTAATGAACACTCTGGCGCAGCCTAGTTTCTTTGGAAGTGGAGGTGCTCAAAGCAGCCCTTATTCTACACCAGTGGGGCTGACGGTCTTTCCTGGTTCAACTTCTCAGCAATCATCCATTGCCTTCAATGACTCTAGCTCCGCTATAATGTTTCAGACAACATCAGATGTTCAATTGTTAAATAAGTCTCAAGTGGAGAATGAGTCCCCAGATGTCAGTATATGGTTAAAAGAGAAATGGAATCCTGGAGAGATTCCGGAAGAAGCTCCTCCAGATAGATTTGTTCGGTAG 1089 0.4334 MREICRNFQRGSCQYGERCRYLHVNQQQQKSNVNGFGGPSSSHQQHNTNPFGFGTQAGSGSHQQQNTNPFGFGVQNSSQLNGTPRSEFKTNQFKPFENKWNRHSSNPQSGASRQSDNHSQPVNHSCTDPENCKRQIAEDFQQEKPLWILTCYSHCKGAPCDIVGDISYEELRTAAYEDAKKGMSLQSIVEKERSILKSKFVEFEKLLSEPYRLPLNSSLESQKHQSIGVNANPFSTTTQNNGPLSVSSFSQLGASLNMGSERPSAPLMNTLAQPSFFGSGGAQSSPYSTPVGLTVFPGSTSQQSSIAFNDSSSAIMFQTTSDVQLLNKSQVENESPDVSIWLKEKWNPGEIPEEAPPDRFVR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4604g00007 362 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Gabi4604g00007 362 Pfam CCCH-type zinc finger 4 23 IPR041367 -
Gabi4604g00007 362 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 3 45 - -
Gabi4604g00007 362 SUPERFAMILY CCCH zinc finger 2 23 IPR036855 GO:0046872
Gabi4604g00007 362 Gene3D - 1 71 - -
Gabi4604g00007 362 ProSiteProfiles Zinc finger C3H1-type profile. 1 26 IPR000571 GO:0046872
Gabi4604g00007 362 MobiDBLite consensus disorder prediction 30 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4604g00007 Gabi-Chr4604 49041 56060 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi4604g00007 zf-CCCH 5.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4604g00007 K14321 - gmx:100814339 541.576