Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4603g00003 ATGATTGTTAAGTCGTTTGATATAGCGAATCATGTCCAATATCTGGAACAAACATTTCAGAAGCTCAGAGACTACCGTATTCGTCTGAACCCGATAAATGGAGTCCCAGTAGGAAAGTTCCTGGATTTTATGTTGACCCATAGAGGGATTGAAGCAAATCCTGACAAATGCAAAGCGGTACTTGATATGAAAGCTCCTCAAAGCAAGAAGGAGGTTCAGCAACTGACTGGTAGACTGGTTGCTTTAATCCGGTTCCTACCCAAGTCGGCTGAAAATGCCCTGCCATTCTTCAAGTTGTTGAAAAAGGAAGTTGTGCAAGGTTGGAACCCGGAATGCCAATCCGCGTTCGATAAAATTAAGAAATGTTTGGAAGCATCACCATTCACAGCATTATCTCTTGAACCAAACATGTCTTTGTTCCTGTACCTCTTTCTGAAAGTGCAAATCTTCCTCATCTGTGCTTCTCCATCTCTTTCCTCTATCACTGAGCTTGACACTCTGATGGCAATCAAAGACTCCATAGACCCAGAAAACCGTGTGTTGATATCATGGACACCCCATTCTGACCCATGTAGTGATGCTTTTGAGGGTGTGGCTTGCAATGAGCAAGGTCTTGTTACTAATATTTCATTGCAAGGAAAGGGTCTATCTGGGAGGATACCTGCTGTCGTGGCTGGTCTCAAGAGCTTGACGGGTCTGTATTTGCACTTCAATGCTCTGAATGGGATATTACCAATGGAGATTGCAGGTTTGACTGGATTAAGTGATTTGTATCTCAATGTGAATAATCTGTCTGGTGATATCCCTCGTGAGATTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTTGTTATAACGAGTTTACTGGGAGTATACCAAGAGAAATGGGAAAGTTAAGGAAGCTGAGTGTTCTTGCTCTGCAGTATAATCAATTAAGTAGCGCAATTCCTGCAAGTTTGGGTGAACTGGAGACATTAACACGACTGGATCTGAGCTTCAATAGCCTTATTGGTCCTATTCCAGTGACATTGGCTAATCCACCTAAACTGGAGAGTCTAGATATTCGAAACAATTCTCTCTCAGGCAGGATTCCTATTGCTCTAAAGAGACTGAAAGGTGGGTTCCAGTACATCAACAACCCTGGTTTATGTGGGACTGGATTTTCCAATTTAAATCTTTGTAAAGTAGTAAGCAGTTCAGACCCAGTTAGACCTGAACCATATGTACCTAGTAATCTTCCAGCATCAGTTGAACCAAAAGCTAATAACTGTAATGATACTCATTGTAAAAAGGAATCAGAATCTTTAAAATTTGGTTTGGCTTTTGGGGTGATTGGAGTTATTGTTCCTTCAACTGTTTCTGGACTTTTTGTGTTCTTATGGTACCGTCATCAGAAGCAGAAAACTTTAAGCACTGCTGACGTTTCTAATAGCAGGCTTAGTTCTGACAAGATGAAAGAAGTATGCAGGAAAAGAGCATCTCCTCTTATAAGTTTGGAATATTCTAATGGATGGGATCCATTAGCCAAAGGTGGAACTGGTTATTCCCAGGAAATGTTGGAAAGCTTTATGTTCAATCTTGAAGAGGTAGAACGAGCAACTCAGTGCTTCTCAGAGCTTAATTTGTTGGGAAAGAGTAATTTTTCAGCTATCTACAGGGGAATCTTGAGAGATGGATCAATTGTGGTTATAAAATGCATCGCCAAGACAAGCTGCAAGTCTGATGAGACTGAATTCTTGAAAGGTTTGAAGATATTGACCTCATTAAAGCATGAAAATCTAGTTCGGTTCAGAGGCTTTTGCTGTTCAAAAGGCCGCGGGGAATGTTTTCTGATTTATGATTTTGTATCAAATGGGAGTTTGTTACAGTATCTTGATGTGAAGAGAAGCTATGCTAAGGTACTTGAATGGTCCACCAGAGTATCCATCATCCATGGTATTGCCAAAGGTATTGGTTATCTGCATGGAAGGAAAGGAAGAAAACATGCTCTAGTTCACCAGAATATATCAGCTGAAAAAGTACTTCTTGATGCTCGGTATAATTCCTTACTTGCAGATTCAGGATTGCACAAACTCCTTGCAGATGATGTTGTTTTTTCTTCCCTCAAAGCTAGTGCAGCCATGGGATATCTGGCTCCAGAGTACACATCAACTGGTCGTTTGACCGAAAAGAGTGATGTGTATGCATTTGGGGTGATAGTTTTCCAGCTTCTTACTGGAAAGCGTAATATCAGTGAGTTAAGTCACCAATGGGTAGAAAATGCTAGTATTAAGGATATAGTTGATGAGAATCTTGAAGGGAAGTTCTCAGAATCAGAGGCAGCCAAACTGGTTACAGTTGCTTTGCTTTGCACCCATGAATCACCCCATCACAGACCATCTATGGACAATGTAATGCAAGAGTTGGATGATAAACTGTAG 2421 0.4081 MIVKSFDIANHVQYLEQTFQKLRDYRIRLNPINGVPVGKFLDFMLTHRGIEANPDKCKAVLDMKAPQSKKEVQQLTGRLVALIRFLPKSAENALPFFKLLKKEVVQGWNPECQSAFDKIKKCLEASPFTALSLEPNMSLFLYLFLKVQIFLICASPSLSSITELDTLMAIKDSIDPENRVLISWTPHSDPCSDAFEGVACNEQGLVTNISLQGKGLSGRIPAVVAGLKSLTGLYLHFNALNGILPMEIAGLTGLSDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNEFTGSIPREMGKLRKLSVLALQYNQLSSAIPASLGELETLTRLDLSFNSLIGPIPVTLANPPKLESLDIRNNSLSGRIPIALKRLKGGFQYINNPGLCGTGFSNLNLCKVVSSSDPVRPEPYVPSNLPASVEPKANNCNDTHCKKESESLKFGLAFGVIGVIVPSTVSGLFVFLWYRHQKQKTLSTADVSNSRLSSDKMKEVCRKRASPLISLEYSNGWDPLAKGGTGYSQEMLESFMFNLEEVERATQCFSELNLLGKSNFSAIYRGILRDGSIVVIKCIAKTSCKSDETEFLKGLKILTSLKHENLVRFRGFCCSKGRGECFLIYDFVSNGSLLQYLDVKRSYAKVLEWSTRVSIIHGIAKGIGYLHGRKGRKHALVHQNISAEKVLLDARYNSLLADSGLHKLLADDVVFSSLKASAAMGYLAPEYTSTGRLTEKSDVYAFGVIVFQLLTGKRNISELSHQWVENASIKDIVDENLEGKFSESEAAKLVTVALLCTHESPHHRPSMDNVMQELDDKL 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4603g00003 806 Gene3D - 55 136 IPR043128 -
Gabi4603g00003 806 Gene3D Ribonuclease Inhibitor 315 380 IPR032675 -
Gabi4603g00003 806 Pfam Protein tyrosine and serine/threonine kinase 541 802 IPR001245 GO:0004672|GO:0006468
Gabi4603g00003 806 SUPERFAMILY DNA/RNA polymerases 2 131 IPR043502 -
Gabi4603g00003 806 FunFam Protein NSP-INTERACTING KINASE 2 273 395 - -
Gabi4603g00003 806 ProSiteProfiles Protein kinase domain profile. 537 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4603g00003 806 Gene3D Transferase(Phosphotransferase) domain 1 617 805 - -
Gabi4603g00003 806 SUPERFAMILY L domain-like 161 371 - -
Gabi4603g00003 806 FunFam Protein NSP-INTERACTING KINASE 2 509 615 - -
Gabi4603g00003 806 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 208 803 - -
Gabi4603g00003 806 Pfam Leucine rich repeat N-terminal domain 162 201 IPR013210 -
Gabi4603g00003 806 Gene3D Ribonuclease Inhibitor 160 314 IPR032675 -
Gabi4603g00003 806 SUPERFAMILY Protein kinase-like (PK-like) 518 802 IPR011009 -
Gabi4603g00003 806 Gene3D Phosphorylase Kinase; domain 1 512 615 - -
Gabi4603g00003 806 CDD STKc_IRAK 543 803 - -
Gabi4603g00003 806 FunFam Leucine-rich repeat receptor-like kinase 162 271 - -
Gabi4603g00003 806 Pfam Leucine rich repeat 300 360 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4603g00003 Gabi-Chr4603 57545 62325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4603g00003 137 650 Miscellaneous Gene Families AT4G22730 50.749 7.21e-177 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Gabi4603g00003 PK_Tyr_Ser-Thr 7.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4603g00003 - - vvo:131626249 967.992