Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4603g00002 ATGATGGGTTCTGTCACTTACTCAAATCCATGGGCACCAAATGCTTCTTTCAAAGACTGTTCTCAAGGAATTTGCAGCATCTATTGTCCTCAGTGGTGTTACATCATCTACTCTCCTCCTCCTCCTTCAATCTTGCTTGGTGATGACACAAATGATGACCCTTCTGGCTTTCAATTCTCTCCTCTCATAGTAGCTGTCATTGGAATCCTAACAAGTACTTTCATCTTGGTCACTTATTATACCATTATCTCAAGGTTTTGTAGGCATAGGGGCAGAATCAATGACCCATCTTCTTCACAAATAGATCATGAGGATGGAGATGCTATGAACAGAGATTTGGCTCAAGTTTCTTCACCTTCTGGTTTAGATGAGGCTCTCATCAAATCAATCACTGTTTGTGAGTACAAGAAAGGTTGTGGGTTGGTGGAGGGTAGTGATTGTTCTGTGTGTTTGAGTGAGTTTCAAGAGAACGAGAACTTGAGATTATTGCCAAAATGCAACCATGCCTTTCATCTACCTTGTATTGACACTTGGCTTAAATCCCATTCAAGTTGTCCTTTGTGCCGTTCCAATATCTCCTCAACCATCACTTCTAGTACAAATCAAAGAGATACTTCATCTATGGAAGCGCCAGCAAGCATAAGTATCAATGCCTTGGAATACCAGCAAAGGAGTGATGTTGTCGTAATTATTCAGAGTTCTGAGCCAATTTCACAGCAAGAAGTAGTTGTTAACTTTGGTGGTGAAGTTCTTCCAAAGTTGCCAGTGGAAGGTGCTCATGGTGGACAGAATATGGAACATATAATTAGGCATGAGATGAATTCTTGTACAAGTCAAAGATGGGTATCTATTGCTGATATATTGAATGAAAGTGAAGGTGATGTGGAATTGCAGAGGGAGGTATCTATGTAG 912 0.4057 MMGSVTYSNPWAPNASFKDCSQGICSIYCPQWCYIIYSPPPPSILLGDDTNDDPSGFQFSPLIVAVIGILTSTFILVTYYTIISRFCRHRGRINDPSSSQIDHEDGDAMNRDLAQVSSPSGLDEALIKSITVCEYKKGCGLVEGSDCSVCLSEFQENENLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRSNISSTITSSTNQRDTSSMEAPASISINALEYQQRSDVVVIIQSSEPISQQEVVVNFGGEVLPKLPVEGAHGGQNMEHIIRHEMNSCTSQRWVSIADILNESEGDVELQREVSM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4603g00002 303 SUPERFAMILY RING/U-box 141 195 - -
Gabi4603g00002 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 196 IPR013083 -
Gabi4603g00002 303 PANTHER RING-H2 FINGER PROTEIN ATL16 51 237 IPR044600 GO:0016567|GO:0016740
Gabi4603g00002 303 FunFam RING-H2 finger protein ATL54 122 195 - -
Gabi4603g00002 303 SMART ring_2 147 188 IPR001841 -
Gabi4603g00002 303 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Gabi4603g00002 303 Pfam Ring finger domain 146 189 IPR001841 -
Gabi4603g00002 303 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4603g00002 Gabi-Chr4603 4927 6201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4603g00002 2 296 C3H Transcription Factor Family AT3G03550 45.820 1.06e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4603g00002 - - lang:109355345 361.303