Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4602g00001 ATGTTTCAGTTTCAACCCAAACAGTTTTACCTCATTCACCTCACATGGGTTCATATGCTCCTTCTCCTACTGCAGCACCAACATGTTGCTGATGCACAGTCAACCATGGAACCAGTTCCCACATATATGTCTCACCATAATTGGGAACCTTCTTTTGCAATCACCGTTGGAGCCATCATCTTTGCCCTTCTCTTCCTTGGAATCATCTCAATCTACATCCGAAACTGTGTTGGTTCACGCATCATCATCACACAATCAAACCCAACATGTTCTTGTTCACAAGGGATCAACAAGGAACTCCTCAACACTTTCCCGGTTCTCTTATACTCCACCATCAAGCACCTCAAGATCGGAAAAGGAGCACTTGAATGTGCTGTGTGCTTGATCGATTTCAAAGACAACGACACCCTCAGGTTGCTACCCAAATGCAACCACGTGTTCCACCCTCAATGCATTGATTCATGGCTTGCTTCTCACGTGACATGCCCTGTTTGTCGTGCTAATTTGTACCAAGATTCATGTCAAGTTTCCATAACAGTGACGACCCTTTTGAGCACTGATCAAATGGGTGTCGAAAGTCCTGAAACTCATGATGCTGAAGAAAACCAAACAGACCCAAACCCAAACTCAAACTCAAACCCAGATTTGCATAACTTGAACGAAGGTGAGGGTAATGGTGATGGTGGGGTTGCCTCAAAATTGAAGCTTTTGAGGTCAAATTCGACGGGTCATTCACTTGTTGAGGAAGGGAAGTGTATGGACAGGTACACGCTGACGTTGCCGGAAGATGTGAGGAGGAACATTCTGGTGAACAATGGAGGATGGCGTTCAGCTAGTTACCACAACAACAACAACAACGTGGTTAAGGGGTTGTTTTGGAATGACAACGAAGGTAGCAGCAGAGGGAAGAGGAACAATGGTGAGGGTAGGGTGGAGAGGTGGGTGCTGTGCACGCCGCCATTTGTTGCGCGCCGTGGTTGA 981 0.4648 MFQFQPKQFYLIHLTWVHMLLLLLQHQHVADAQSTMEPVPTYMSHHNWEPSFAITVGAIIFALLFLGIISIYIRNCVGSRIIITQSNPTCSCSQGINKELLNTFPVLLYSTIKHLKIGKGALECAVCLIDFKDNDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLYQDSCQVSITVTTLLSTDQMGVESPETHDAEENQTDPNPNSNSNPDLHNLNEGEGNGDGGVASKLKLLRSNSTGHSLVEEGKCMDRYTLTLPEDVRRNILVNNGGWRSASYHNNNNNVVKGLFWNDNEGSSRGKRNNGEGRVERWVLCTPPFVARRG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4602g00001 326 MobiDBLite consensus disorder prediction 187 231 - -
Gabi4602g00001 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 173 IPR013083 -
Gabi4602g00001 326 Pfam Ring finger domain 123 166 IPR001841 -
Gabi4602g00001 326 SUPERFAMILY RING/U-box 123 172 - -
Gabi4602g00001 326 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Gabi4602g00001 326 CDD RING-H2_EL5-like 123 166 - -
Gabi4602g00001 326 SMART ring_2 124 165 IPR001841 -
Gabi4602g00001 326 MobiDBLite consensus disorder prediction 203 219 - -
Gabi4602g00001 326 FunFam E3 ubiquitin-protein ligase ATL6 84 172 - -
Gabi4602g00001 326 PANTHER RING FINGER DOMAIN-CONTAINING 40 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4602g00001 Gabi-Chr4602 9987 11861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4602g00001 19 324 Rapid Response to Elicitors AT3G05200 37.695 3.49e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4602g00001 K10664 - gmx:100782532 309.686