Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi45g00005 ATGGAATACAAAGTGAAAACCACAACATCACCTTCTCCACCAATCCCAATCTATGTTCCCACCATGCTTTCAAACTCTCCTCCATCTTCATCTTCTTCACCTCCTCTTTCACTTTCTCCCGCACCTTTCCCTTCACCCTCTCAGTCCTCTCCCTCTACTGCTGCTGCTCCTCCTCCACCACCACCAGTGGTGGTTAGCCCTTGTGCTGCCTGCAAGATCCTCCGCCGCAGGTGTGTGGAGAAGTGTGTCCTTGCTCCCTATTTTCCTCCCACTGATCCAATCAAGTTCACGATTGCTCATAGAGTCTTTGGAGCTAGTAACATCATCAAGTTCTTGCAGGAACTACCAGAATCTCAGAGAGCAGATGCTGTGGGAAGCATGGTTTATGAAGCAAATGCTAGGATCAGAGACCCAGTGTATGGTTGTGCAGGTGCAATATTTCAACTTCAAAAGCAAGTTAATGAGCTACAAGCACAGCTAGCCAAAGCACAAGCTGAGGTAGTCAACATGCAGTGCCAACAAGCTAATTTAGTGGCTCTAATTTGCATGGAAATGAGTCAATCACAGGACCAGCACATGCTTCAACTTCAACCTCAACCTCATGTTGATATGAGCTGCTGCTTAGAGGACAACACTATTGGCTCTGCTTGGGAGCCTCTTTGGACATGA 669 0.4738 MEYKVKTTTSPSPPIPIYVPTMLSNSPPSSSSSPPLSLSPAPFPSPSQSSPSTAAAPPPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPIKFTIAHRVFGASNIIKFLQELPESQRADAVGSMVYEANARIRDPVYGCAGAIFQLQKQVNELQAQLAKAQAEVVNMQCQQANLVALICMEMSQSQDQHMLQLQPQPHVDMSCCLEDNTIGSAWEPLWT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi45g00005 222 ProSiteProfiles LOB domain profile. 66 167 IPR004883 -
Gabi45g00005 222 MobiDBLite consensus disorder prediction 33 59 - -
Gabi45g00005 222 Pfam Lateral organ boundaries (LOB) domain 67 164 IPR004883 -
Gabi45g00005 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 66 191 - -
Gabi45g00005 222 Coils Coil 146 173 - -
Gabi45g00005 222 MobiDBLite consensus disorder prediction 1 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi45g00005 Gabi-Chr45 52508 53840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi45g00005 63 222 AS2 family AT1G07900 70.909 2.02e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi45g00005 LOB 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi45g00005 - - gmx:100806667 308.916