Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4593g00002 ATGTCTGGGAATATCAAGGAGGGGAGAGCTTTCGCAAAAGGGTATTCTGTTATTTTACTACTATTGACTTTTCTTCTTTGTAGCATAGAGGGGTTGAACACTGAGGGGAAAATCCTCCTAGAGCTTAAGAATGGTCTTCAAGATAAATTTAATCTTTTGGGAAATTGGAAGTCTACAGATGAAACCCCATGTGGATGGATAGGTATAAATTGCACTTTTGAATATAGTGATAATAATCAAAATAATCCGGTGGTCATGTCTCTTAATTTGAGTTCAATGGGTCTTTCTGGAGCTCTAAATACTAGCATTGGGGGTCTGTCCCATCTAACTTATCTCAATCTTGCTTACAATGATCTGACTGGTAATATCCCTAAAGAGATTGCTGAGTGCTTGAGTTTGGAATATCTTTATTTGAACAATAATCAATTAGAGGGACCAATTCCTGCTGAATTGGGTAAGCTGTCTGTTTTGAGAAATTTGAATATTTGCAACAACAAACTTTCTGGTGTTCTTCCAGATGAGTTTGGAAACTTGTCTTCATTGGTGGAGTTAGTGGCCTATAGCAACTTTCTCGTTGGGCCCCTGCCTAATTCCATTGGAAATCTTAAGAATCTTGAAACTTTCAGAGCTGGGGCAAATAACATTACTGGTAGCTTGCCAAAGGAAATTTGGGGATGTAAGAGCTTGGTATACCTTGGCCTTGCCCAAAATCAGATAGGAGGGGAGCTGCCAAGCGAGATTGGGATGCTTGACAGCTTAAAAGAACTGATTTTATGGGAAAACCAGTTATCTGGGCTTATTCCTAAAGAGGTTGCGAATTGTAGCAGTCTTGAGACCCTTGCTTTATATGGGAATGATCTTGTTGGACCTATACCTCGGGGGATTGGGAACCTCAAATCATTGAAGAAGTTGTATCTTTACAGAAATAAGTTGAATGGAACCATTCCAAGGGAAATTGGAAATCTTTCTTCAGGTTTACAAATTGATTTCTCAGAGAACTCTTTAGTAGGTGATGTTCCTTCCGAGTTGAGCAAAATAAGTGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCAGCTAACTGGTGTTATACCAAATGAGTTTAGTAGCTTGAAAAACCTCACAAAGCTGGACCTGTCAATGAATCATCTTACAGGTCCAATTCCAATTGGCTTCCAATATTTGACTCAAATGTATCAGTTGCAACTTTTTGATAACTCCTTAAGTGGTATTATTCCTCAGGGACTTGGACTTCATAGTCCTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAGGCATACCTCCTCATCTATGCTTGAATTCTCGCTTGATGTTGTTGAATCTGGCAGCTAATCAGCTTTATGGAAATATACCTTCAGGGATATTGAAATGTGAATCATTGGCACAGTTGCTGTTGGTTGGAAACAGGCTTACTGGTGGCTTCCCTTCAGAATTGTGTAAACTGGTGAACTTTACTGCCATTGAGTTGAATGAGAACAGGTTCAGTGGTCCAATTCCTACTGAGATTGGGAACTGCCACAATTTGCAAAGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTTCCTAAGGAAATAGGAAATCTTTCTCAATTGGTCACCTTTAATGTTTCATCAAATCTTTTCACTGGAAGAATCCCACCTGAAATTTTTTGGTGCAAAAGTCTCCAGCGGCTTGATCTCAGTCAGAATAGCTTTACTGGTTCCTTGCCAAATGAGCTTGGGACACTTCAGCATTTGGAGATTCTCAAGCTCTCAGACAATAAACTGTCTGGATATATTCCTGCAGCATTAGGTAATCTGTCTCATTTGAACTGGTTGCAGATGGATGGCAATATGTTTTTTGGTGAAATACCTCCTCAGTTGGGTTCTCTTTCAAGCTTACAGATTGCAATGGATCTCAGTTATAATAATCTTTCTGGAAGAATACCATCTCAGCTTGGCAATCTCAATATGCTTGAATATCTCCTTCTCAATAACAATCATTTGGATGGCGAAATTCCCAGCACATTTGACGATCTTTCAAGCTTGCTCGGGTGTAATTTCTCATATAATAACCTCTCTGGACCTTTACCTTCCACTAAAATTTTCCAAAATATGGCTGTAAGCAGCTTTATTGGTGGTAACAAAGGCCTCTGTGGTGCACCTCTCAGTGACTGCAACACCAATCCAGCTTCCCACACTCTTCCTCCCGTGAAAAGTGTTGATTCTACACGTGGTAAAATTGTAATGATAACTGCAGCTGCTGTTGGTGGTGTTTCTCTCATTTTAATTTTAGTTATTTTATATATTATGAGACGTCCTAGGGAGTCTGTAGATTCCTTTCGAGACACTGAGACTCCCTCCCCAGATTCAGATATATATTTTCCTCCAAAGGAAGGTTACACATTCCAAGATCTAGTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTTATTGGTAGGGGAGCATGTGGAACAGTTTATAAGGCAGTCATGAAATCTGGTAAGACTATTGCTGTTAAGAAGTTAGCATCTAACAGGGAGGGGAACAACATTGACAATAGTTTCAGGGCTGAAGTATTGACTCTTGGAAGGATAAGGCATCGAAATATAGTGAAGTTGTATGGGTTTTGCTATCACCAGGGTTCCAATCTCCTACTTTATGAGTACATGGAAAGGGGTAGCTTAGGTGAACTACTGCATGGTTCTGCAACTAATTTGGAATGGCCAATTCGGTTCATGATTGCTCTTGGAGCTGCTGAGGGTCTTGCCTACTTGCATCATGACTGCAAACCAAAGATTATTCACCGTGATATAAAATCTAATAACATTCTCCTTGATGAAAATTTTGAGGCCCATGTTGGTGATTTCGGTTTGGCAAAAGTGATTGACATGCCCCAGTCAAAATCAATGTCTGCAGTTGCTGGATCTTATGGATATATTGCTCCTGAATATGCATATACCATGAAGGTCACAGAAAAGTGTGACATATATAGTTATGGTGTTGTGCTTTTGGAATTGCTAACGGGAAAGTCTCCAGTTCAGCCGTTGGAGCAAGGAGGTGACCTTGTCACATGGGTGAGAAACCATATTCGAAACCATAATAATACATTGACATCAGAGATACTTGACAATCGTGTGGATCTTCAAGACCAAACCACTATGAATCACATGCTCACTGTTTTGAAACTTGCTTTACTGTGCACAAGTGTGTCTCCTTCTAAGAGGCCATCAATGCGGGAAGTTGTTTTGATGCTTATTGATTCGAATGAGAGAGAAGGAAACTTAACACTGACTCAAACCTCACAATGA 3321 0.3978 MSGNIKEGRAFAKGYSVILLLLTFLLCSIEGLNTEGKILLELKNGLQDKFNLLGNWKSTDETPCGWIGINCTFEYSDNNQNNPVVMSLNLSSMGLSGALNTSIGGLSHLTYLNLAYNDLTGNIPKEIAECLSLEYLYLNNNQLEGPIPAELGKLSVLRNLNICNNKLSGVLPDEFGNLSSLVELVAYSNFLVGPLPNSIGNLKNLETFRAGANNITGSLPKEIWGCKSLVYLGLAQNQIGGELPSEIGMLDSLKELILWENQLSGLIPKEVANCSSLETLALYGNDLVGPIPRGIGNLKSLKKLYLYRNKLNGTIPREIGNLSSGLQIDFSENSLVGDVPSELSKISGLSLLFLFENQLTGVIPNEFSSLKNLTKLDLSMNHLTGPIPIGFQYLTQMYQLQLFDNSLSGIIPQGLGLHSPLWVVDFSDNNLTGGIPPHLCLNSRLMLLNLAANQLYGNIPSGILKCESLAQLLLVGNRLTGGFPSELCKLVNFTAIELNENRFSGPIPTEIGNCHNLQRLHIANNYFTLEFPKEIGNLSQLVTFNVSSNLFTGRIPPEIFWCKSLQRLDLSQNSFTGSLPNELGTLQHLEILKLSDNKLSGYIPAALGNLSHLNWLQMDGNMFFGEIPPQLGSLSSLQIAMDLSYNNLSGRIPSQLGNLNMLEYLLLNNNHLDGEIPSTFDDLSSLLGCNFSYNNLSGPLPSTKIFQNMAVSSFIGGNKGLCGAPLSDCNTNPASHTLPPVKSVDSTRGKIVMITAAAVGGVSLILILVILYIMRRPRESVDSFRDTETPSPDSDIYFPPKEGYTFQDLVEATKRFHESYVIGRGACGTVYKAVMKSGKTIAVKKLASNREGNNIDNSFRAEVLTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSATNLEWPIRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPLEQGGDLVTWVRNHIRNHNNTLTSEILDNRVDLQDQTTMNHMLTVLKLALLCTSVSPSKRPSMREVVLMLIDSNEREGNLTLTQTSQ 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4593g00002 1106 Gene3D Ribonuclease Inhibitor 32 198 IPR032675 -
Gabi4593g00002 1106 ProSiteProfiles Protein kinase domain profile. 816 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4593g00002 1106 Pfam Protein kinase domain 817 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4593g00002 1106 SUPERFAMILY L domain-like 280 492 - -
Gabi4593g00002 1106 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 196 289 - -
Gabi4593g00002 1106 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 894 1106 - -
Gabi4593g00002 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 937 949 IPR008271 GO:0004672|GO:0006468
Gabi4593g00002 1106 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 781 893 - -
Gabi4593g00002 1106 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 290 394 - -
Gabi4593g00002 1106 SMART LRR_typ_2 610 634 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 154 177 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 370 393 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 659 682 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 298 322 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 586 609 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 202 226 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 250 273 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 538 562 IPR003591 -
Gabi4593g00002 1106 SMART LRR_typ_2 106 130 IPR003591 -
Gabi4593g00002 1106 Gene3D Transferase(Phosphotransferase) domain 1 894 1104 - -
Gabi4593g00002 1106 Pfam Leucine rich repeat 564 622 IPR001611 GO:0005515
Gabi4593g00002 1106 Pfam Leucine rich repeat 252 311 IPR001611 GO:0005515
Gabi4593g00002 1106 Pfam Leucine rich repeat 85 143 IPR001611 GO:0005515
Gabi4593g00002 1106 Gene3D Phosphorylase Kinase; domain 1 784 893 - -
Gabi4593g00002 1106 SMART serkin_6 816 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4593g00002 1106 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 31 195 - -
Gabi4593g00002 1106 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Gabi4593g00002 1106 SUPERFAMILY L domain-like 34 323 - -
Gabi4593g00002 1106 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 418 733 - -
Gabi4593g00002 1106 Gene3D Ribonuclease Inhibitor 204 352 IPR032675 -
Gabi4593g00002 1106 Gene3D Ribonuclease Inhibitor 353 733 IPR032675 -
Gabi4593g00002 1106 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 490 1090 - -
Gabi4593g00002 1106 SUPERFAMILY Protein kinase-like (PK-like) 792 1089 IPR011009 -
Gabi4593g00002 1106 SUPERFAMILY L domain-like 466 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4593g00002 Gabi-Chr4593 55391 60591 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4593g00002 32 1089 Receptor kinase-like Gene Family AT5G56040 38.189 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi4593g00002 Pkinase 9.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4593g00002 - - gmx:100805792 1778.45