Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4591g00001 ATGAAGGATAGGCAACGGTGGAGAGCTGAAGAGGATGCTTTACTACGTGCTTATGTCAAACAATATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACAACTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTATCTCAAGCCGGGTATTAAGAAAGGATCTCTTACTGAGGAAGAGCAGCGCCTTGTCATCAACCTTCAAGCAAAACATGGGAACAAATGGAAGAAGATTGCTGCCGAAGTTCCCGGTCGCACCGCTAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAGGAGAAGCAGCAAAGAGAAACAAAAGGGATTAACAGAACTGTTGACCCAATTAACGATAGCAAGTACGAGCATATATTGGAGAGTTTCGCGGAGAAACTAGTGAAAGAGCACCCTTCACCATCATCATTTGTTATGGCTGCTTCTAACAGTTCTTTTCTGCATACTGATGCACCAGCTTTGCTTCCTTCTTGGCTTTCCAATTCTAACAGCACTGCACCTGTTAGGCCACCTTCCCCTTCCGTGACGCTAAGTCTTTCTCCCTCGACGGTGGCAGCACCTCCTCCATGGTTGCAACCTGTAAGAGGACCCGATAATGCCCCTCTTGTTTTGGGGAATGTAACACCTCATGGGTCTGTTCTAGCTTTTGGTGAAAACATGGTCATGTCTGAGTTGGTGGAGTGCTGTAAAGAGTTAGAAGAAGTACATCATGCTTTGGCAGCGCATAAGAAGGAAGCCGCTTGGCGTTTAAGCCGGGTGGAGTTGCAGTTGGAGTCTGAGAAGGCGTGCCGAAGAAGGGAGAAGATGGAAGAAATTGAAGCAAAGATTAAAGCTCTCAGGGAGGAGCAAACAGCTGCTTTGGATAGAATTGAAGCAGAATATAGGGAACAGTTGGCAGGGTTGAGAAGAGATGCAGAAACCAAGGAGCATAAGTTGGCTGAGCAATGGGCTGCAAAGCATTTGCGACTTACTAAGTTTCTAGAACAGGTAGGATGCAGATCAAGGCTTTCTGAGCCAAATGGAAGATAG 1059 0.4674 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTTLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRETKGINRTVDPINDSKYEHILESFAEKLVKEHPSPSSFVMAASNSSFLHTDAPALLPSWLSNSNSTAPVRPPSPSVTLSLSPSTVAAPPPWLQPVRGPDNAPLVLGNVTPHGSVLAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKACRRREKMEEIEAKIKALREEQTAALDRIEAEYREQLAGLRRDAETKEHKLAEQWAAKHLRLTKFLEQVGCRSRLSEPNGR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4591g00001 352 Gene3D - 4 58 - -
Gabi4591g00001 352 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 347 - -
Gabi4591g00001 352 Coils Coil 279 299 - -
Gabi4591g00001 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Gabi4591g00001 352 CDD SANT 6 53 IPR001005 -
Gabi4591g00001 352 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Gabi4591g00001 352 Pfam Myb-like DNA-binding domain 7 68 - -
Gabi4591g00001 352 FunFam MYB-related transcription factor 4 58 - -
Gabi4591g00001 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Gabi4591g00001 352 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Gabi4591g00001 352 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Gabi4591g00001 352 CDD SANT 63 104 IPR001005 -
Gabi4591g00001 352 SMART sant 58 106 IPR001005 -
Gabi4591g00001 352 SMART sant 3 55 IPR001005 -
Gabi4591g00001 352 Coils Coil 301 321 - -
Gabi4591g00001 352 Gene3D - 62 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4591g00001 Gabi-Chr4591 25716 29117 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4591g00001 1 343 MYB Transcription Factor Family AT2G37630 66.667 3.73e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4591g00001 Myb_DNA-bind_6 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4591g00001 K09422 - gmx:100819082 604.749