Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4590g00005 ATGTTGGGTGCTCCATCTTGTTCCCACTTGCTCCATATCATTGATTGCTTTATAGCTTTTCTTCTTGTGCTCATCACCCTTTCTTCCCTTCCATCAACAGTTGAACCACTATTCTTCAACATAACAAACTTCAATGTTGCTGGAAGCAGCATGTCATATGAAGGTGATGGCATGGCAAGCAACGGATCCATAGACTTAAACAAAGTGAATAATATTGGCCGTGTTGGTAGAGCCATATATGGAGAACCCTTACACTTGTGGGACTCATCTTCTAAAGTTCTCACAGATTTCACCACTAGTTTCACATTCATTATTGACAAGGTGAGTAATAAAACATATGGTGATGGCTTTACCTTTTACTTGGCACCTCTTGGGTACCAGATTCCTCCAAACTCTGCAGGTAGCACTTTTGGTCTATTCAATGCCACCACCAATAGCGACTTACCCCAAAACCATGTTTTAGCCGTTGAGTTTGATACTTACAAAAATTCATTTGACCCACCAATGAAACATGTTGGGATTGATGATAACTCTCTCACTTCTGTGGCTTTTGCCATGTTTGATATTGACAACAACATTGCGAACCCATGTCATGCTTTGATTACTTACACTGCTTCCACCAACACTCTTGCTGTGTCTTGGTACTTCAATGGGAACACAAGCAGAAATACTTCTCTTTCTTACCAGGTTGACCTCATGAAGATTCTACCAGAGTGGGTAAATTTTGGGTTTTCAGCTTCAACTGGCATTGACACTGAACGAAATCTTATACAGTCTTGGGAGTTTAGCTCAACTTTAAACTCCACTGGTGTGAACAGAACAAACAAGAGGTCCCACACAGTTGTGCTAGTTGTTGCTGTGATTTGTCCAGTGATTTTGGTGCTCTTGGTGGCGAGTTTTGCTTATTGGTTAATCCTCAAGAAGAGAAGAAGAACCAACGCTGATGGATATAACGATGAGTATGGATCCACCTCGGTGATTTTTGATTTGGATAAAGCAACTATACCTAGAAGATTTGATTACAAAGAGTTAGTTGCCGCCACCAATAGTTTTGCAGATGATAGAAGGCTAGGAAGAGGAGGGTCAGGACAAGTTTACAAAGGGGTTCTGAGTTATCTAGGAAGAGTTGTTGCTGTGAAAAGGATCTTTGGTGACTTTGAGAATTCAGAGAGAGTGTTCACCAATGAGGTTAGGATCATAAGCCGTCTTATACATAGAAACTTGGTGCAATTCATAGGGTGGTGCCAAGAGCAAGGTGAGTTGTTACTTGTTTTTGAGTACATGCCTAATGGAAGCCTCGACACACATCTCTTTGGGAACAAGAAAACTTTGGTTTGGGATGTGAGGTACAAGGTAGCATTACGAGTGGCCACAGCACTTCATTATCTTCATGAGGATGCGGAGCAGTGTGTTCTTCATAGAGATATTAAGTCGGCTAATGTGTTATTGGACACAGATTTCAGCACCAAGCTTGGAGATTTTGGGATGGCAAAGTTGGTGGATCCAAGGTTGAGGACTCAGAGGACAGGGGTAGTTGGGACATATGGGTATCTGGCACCAGAATACATCAATGGAGGGAGGGCTAGTAAAGAATCAGACATGTATAGTTTTGGTGTTGTGGCTCTCGAGCTTGCAAGTGGAAGGAGGACTTATCAAGATGGAGAGTTTCATGTGCCTCTGATGAATTGGGCATGGCAACTCTATGTGGAAGGGAATATTCTTGATGCTGCTGATGATGGATTGGATAAGGTGTTTGATGTGAATGAAATGACAAGCTTGCTCATTGTGGGGCTATGGTGTACCAACCCAAATGAGAAGGAAAGGCCCAAGGCAGCACAGGTAATAAGGGTTCTTCAGCTTGAAGCTCCATTACCTGTGCTTCCACTTGATATGCATGATCATCCTTCTCTTCCAATTATTAGGCAATCCAATTCTTCCGTACAAACACTACTCATCACTAACAGCTTTATTAGTGATGGACGTTAA 1986 0.422 MLGAPSCSHLLHIIDCFIAFLLVLITLSSLPSTVEPLFFNITNFNVAGSSMSYEGDGMASNGSIDLNKVNNIGRVGRAIYGEPLHLWDSSSKVLTDFTTSFTFIIDKVSNKTYGDGFTFYLAPLGYQIPPNSAGSTFGLFNATTNSDLPQNHVLAVEFDTYKNSFDPPMKHVGIDDNSLTSVAFAMFDIDNNIANPCHALITYTASTNTLAVSWYFNGNTSRNTSLSYQVDLMKILPEWVNFGFSASTGIDTERNLIQSWEFSSTLNSTGVNRTNKRSHTVVLVVAVICPVILVLLVASFAYWLILKKRRRTNADGYNDEYGSTSVIFDLDKATIPRRFDYKELVAATNSFADDRRLGRGGSGQVYKGVLSYLGRVVAVKRIFGDFENSERVFTNEVRIISRLIHRNLVQFIGWCQEQGELLLVFEYMPNGSLDTHLFGNKKTLVWDVRYKVALRVATALHYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGVVALELASGRRTYQDGEFHVPLMNWAWQLYVEGNILDAADDGLDKVFDVNEMTSLLIVGLWCTNPNEKERPKAAQVIRVLQLEAPLPVLPLDMHDHPSLPIIRQSNSSVQTLLITNSFISDGR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4590g00005 661 Pfam Legume lectin domain 39 269 IPR001220 GO:0030246
Gabi4590g00005 661 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Gabi4590g00005 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 266 IPR013320 -
Gabi4590g00005 661 ProSitePatterns Legume lectins beta-chain signature. 154 160 IPR019825 -
Gabi4590g00005 661 Gene3D Phosphorylase Kinase; domain 1 328 427 - -
Gabi4590g00005 661 Pfam Protein kinase domain 352 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4590g00005 661 ProSiteProfiles Protein kinase domain profile. 351 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4590g00005 661 CDD lectin_legume_LecRK_Arcelin_ConA 39 266 IPR001220 GO:0030246
Gabi4590g00005 661 Gene3D - 35 280 - -
Gabi4590g00005 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Gabi4590g00005 661 Gene3D Transferase(Phosphotransferase) domain 1 428 623 - -
Gabi4590g00005 661 SUPERFAMILY Protein kinase-like (PK-like) 335 636 IPR011009 -
Gabi4590g00005 661 SMART serkin_6 351 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4590g00005 661 FunFam L-type lectin-domain containing receptor kinase IX.1 428 628 - -
Gabi4590g00005 661 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Gabi4590g00005 661 PANTHER - 59 622 - -
Gabi4590g00005 661 FunFam L-type lectin-domain containing receptor kinase IX.1 336 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4590g00005 Gabi-Chr4590 69317 71302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4590g00005 17 631 Receptor kinase-like Gene Family AT5G10530 44.038 2.36e-174 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi4590g00005 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4590g00005 - - vun:114193012 894.034