Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00081 ATGGCGAATCGTTGGTGGGCTGGGAATGTGGTGGTTAGACCCACAGACCCAAACTCTTCTTCTCCATCGCTTCAGATGAGGAACCCTGAAGAAGACCAAGGTGTCGTTAACAGAGTTGGGCCTAGACGAGAGCAAGAGTTCATCGTCGACAACACCAACACCCCAACCAACAGCAGCAACAGTAACACCAACGCAAACACCGCAGAGGACGACGACAACAACGACCGCGACGCCGACGACCAGAACCCTGGAAGCCACGATACGGCGGAGAGAGGTGGAAGCAGCCGCCGGCCACGCGGCCGGCCTCCGGGATCGAAGAACAAGCCGAGACCTCCTGTGGTCATAACCAAGGAAAGCCCAAACGCGCTTCGCAGCCACGTGTTGGAAATCAGCAGCGGCTGCGACGTCGCGGAGTGCATTGCCACCTTCGCTAACCGCCGGCACCGCGGGGTGTCGGTGCTGAGCGGCAGCGGCGTCGTGACCAATGTCACCCTCCGGCAACCGGCTGCGCCTGGTGGGGTCATCACCCTTCAGGGAAGGTTCGAGATACTGTCTCTCTCCGGTGCGTTCTTGCCGGCACCTTCGCCGCCGGGGGCCACCGGGTTCACGGTGTACTTAGCGGGTTCTCAGGGTCAGGTTGTCGGCGGCACGGTGGTGGGGTCATTGGTGGCTTCGGGACCTGTTATGGTGATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTGCCTTTAGAGGATGAGCAAGCTGGTGAAGAGGATATGCAAGTGCAGCAACACTCAGGTGTCAATGAAGGTGGTGTTGGTGGTGGTGATGGTGCTGCAACTCCTGTTTCTCAGGGCTTGGGTGAACAACAACAGGTTTCAATGCCAGTTTATAATTTGAATCCAAATTTGCTACCAAATGGTCAGATTCCTCAAGATGTGTTCTGGGGTCCTCGCCCTCCTCCTCCTTACTGA 960 0.5708 MANRWWAGNVVVRPTDPNSSSPSLQMRNPEEDQGVVNRVGPRREQEFIVDNTNTPTNSSNSNTNANTAEDDDNNDRDADDQNPGSHDTAERGGSSRRPRGRPPGSKNKPRPPVVITKESPNALRSHVLEISSGCDVAECIATFANRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPGATGFTVYLAGSQGQVVGGTVVGSLVASGPVMVIAATFANATYERLPLEDEQAGEEDMQVQQHSGVNEGGVGGGDGAATPVSQGLGEQQQVSMPVYNLNPNLLPNGQIPQDVFWGPRPPPPY 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00081 319 ProSiteProfiles PPC domain profile profile. 120 258 IPR005175 -
Gabi4587g00081 319 MobiDBLite consensus disorder prediction 47 68 - -
Gabi4587g00081 319 CDD DUF296 124 209 IPR005175 -
Gabi4587g00081 319 MobiDBLite consensus disorder prediction 261 283 - -
Gabi4587g00081 319 SUPERFAMILY AF0104/ALDC/Ptd012-like 120 249 - -
Gabi4587g00081 319 MobiDBLite consensus disorder prediction 13 30 - -
Gabi4587g00081 319 FunFam AT-hook motif nuclear-localized protein 123 250 - -
Gabi4587g00081 319 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 236 IPR005175 -
Gabi4587g00081 319 Gene3D - 123 264 - -
Gabi4587g00081 319 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 55 312 IPR014476 GO:0003680
Gabi4587g00081 319 MobiDBLite consensus disorder prediction 78 97 - -
Gabi4587g00081 319 MobiDBLite consensus disorder prediction 1 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00081 Gabi-Chr4587 916196 917155 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00081 1 319 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 50.299 1.74e-76 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00081 - - qsa:O6P43_014349 377.096