LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi4587g00068	ATGGCTGCTCCTCCTTTGCCGGTAGCATATCAAGCAGGGACGAGTCTAGCAGTCCCAGATTGGTTGAACAAAGGAGACAACACATGGCAAATGGTAGCAGCAACCCTTGTGGGGATTCAAAGCATGCCAGGGTTGGTGATCCTTTATGGCAGCATCGTCAAGAAAAAATGGGCTGTGAACTCTGCTTTCATGGCTCTGTATGCATTTGCAGCAGTTATTATTTGTTGGGTTACTTGGGCTTACAAGATGTCCTTTGGGGAAAAGCTATTACCCTTTTGGGGAAAAGCTGGACCCGCTTTGGGTCAGAAGTTTCTCATAAACCAAGCAGGGTTACCGGCCACCTCTCATTATTTTCATAATGGTCAGCTTGAGACTGCTGAGATTGAACCCTATTATCCCATGGCTACTATGGTGTGGTTTCAGTGTGTTTTTGCTGCTATTGCTCTTGTTATCTTGGCTGGATCTGTTTTGGCTAGGATGAGTTTCATGGCTTGGATGATGTTTGTGCCTCTTTGGCTCACTTTCTCTTACACCATTGGTGCCTTTAGCTTGTGGGGTGGTGGCTTCTTGTTCCAATGGGGTGTTATGGACTACTCTGGTGGTTATGTCATTCATCTTTCTTCTGGTATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCGAAGAAGGACAGAGAGAGATTCCCACCAAACAATGTGTTACTAACGTTGGCAGGGGCAGGGCTACTATGGCTAGGATGGGCAGGTTTCAACGGAGGAGATCCCTACGCGGCCAACACCGACTCCTCCATGGCGGTGCTTAACACCAACATCTGCGCCGCCACCAGCCTCCTCGTGTGGACGTGGCTAGACGTCATTTTCTTCAAGAAACCCTCAGTTATTGGAGCCGTTCAGGGAATGATCACTGGCCTCGTTTGCATCACTCCCGCTGCTGGTTTGATTCAAGGATGGGCTGCAATAGTGATGGGAGTTCTTTCAGGGAGTGTGCCATGGTTCAGCATGATGGTATTAGGGAAGAAGTTAGCATTGTTTCAAATGGTTGATGACACACTTGCTGTGTTCCACACTCATGCTGTGGCTGGCCTTCTTGGTGGTATACTCACTGGCCTTTTCGCTGAGCCTCGTTTAAGTGCACTCTTTCTTCCTGTCACCAATTCCCAAGGAGCAATCTATGGAGGCCCTGGTGGTGTCCAAATCCTTAAACAAATCGTTGGAGGTTTATTTATCATTGGATGGAACATCGTTGTCACTTCAATTATTTGTGTTGCTATAGGTTTAATCGTTCCACTTAGAATGACAGATGATGAGTTGTTGATTGGGGATGACGCGGTTCATGGGGAAGAAGCTTATGCACTGTGGGGTGATGGAGAGAAACTTAGTATCTACAAAGATGATACTACTCACCATGGAATGGCATCAAGTGGTGCAACTCAAGTGGTCTAG	1449	0.4741	MAAPPLPVAYQAGTSLAVPDWLNKGDNTWQMVAATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGEKLLPFWGKAGPALGQKFLINQAGLPATSHYFHNGQLETAEIEPYYPMATMVWFQCVFAAIALVILAGSVLARMSFMAWMMFVPLWLTFSYTIGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLTLAGAGLLWLGWAGFNGGDPYAANTDSSMAVLNTNICAATSLLVWTWLDVIFFKKPSVIGAVQGMITGLVCITPAAGLIQGWAAIVMGVLSGSVPWFSMMVLGKKLALFQMVDDTLAVFHTHAVAGLLGGILTGLFAEPRLSALFLPVTNSQGAIYGGPGGVQILKQIVGGLFIIGWNIVVTSIICVAIGLIVPLRMTDDELLIGDDAVHGEEAYALWGDGEKLSIYKDDTTHHGMASSGATQVV	482

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi4587g00068	482	ProSitePatterns	Ammonium transporters signature.	197	222	IPR018047	GO:0008519\|GO:0016020\|GO:0072488
	Gabi4587g00068	482	FunFam	Ammonium transporter	9	455	-	-
	Gabi4587g00068	482	SUPERFAMILY	Ammonium transporter	21	434	-	-
	Gabi4587g00068	482	NCBIfam	ammonium transporter	26	452	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gabi4587g00068	482	Gene3D	Ammonium transporter AmtB like domains	8	455	IPR029020	-
	Gabi4587g00068	482	PRINTS	Rhesus blood group protein signature	267	289	IPR002229	GO:0005886
	Gabi4587g00068	482	PRINTS	Rhesus blood group protein signature	236	254	IPR002229	GO:0005886
	Gabi4587g00068	482	PRINTS	Rhesus blood group protein signature	141	157	IPR002229	GO:0005886
	Gabi4587g00068	482	PRINTS	Rhesus blood group protein signature	322	340	IPR002229	GO:0005886
	Gabi4587g00068	482	PANTHER	AMMONIUM TRANSPORTER MEP2	14	461	IPR001905	GO:0008519\|GO:0016020\|GO:0072488
	Gabi4587g00068	482	Pfam	Ammonium Transporter Family	29	452	IPR024041	GO:0008519\|GO:0016020\|GO:0072488

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi4587g00068	Gabi-Chr4587	794611	798940	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi4587g00068	134	471	Inorganic Solute Cotransporters	AT2G38290	71.006	8.51e-166	470

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi4587g00068	K03320		-	gmx:100785993	897.116