Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00066 ATGTTTCCCCCAAGTTTTAGCAGGGGTCCTCTCAAAATATTGACGAGGTGGCTCATATTCCTTAGTGTCTTGAAACTCAGTTATGCAATCAAAGATCCTGATGTAGAAGGCGAAGCTCTGCTTGATTTTTTGACGGACCTCAATGATTCCAATAAACGAATAACAGACTGGGATAGTCATTTAGTGAGTCCGTGCTTCAGTTGGTCTCATGTCACTTGTAGAAACGGACATGTCATATCTCTGACTCTGGCTTCGATTGGATTTTCTGGAACACTTTCTCCCTCAATTGCCAAATTGAAATATTTGGTTAGCTTGGAATTGCAGAATAACAATCTTTCAGGCTCTTTACCTGATTACATTGCCAACTTGACAAACCTACAATATCTAAATCTTGCTGACAATAATTTTGATGGTTCTATACCAGCTACATGGGGTCAACTTTCCAGTCTAAAGCATCTGGACCTTTCATCTAATGGTCTTACTGGAAGTATCCCAAAGCAACTCCTTTCAGTTCCATTGTTTAACTTTTCAGATACGCACCTTCATTGTGGCTCTAGCTTCGAGCAGCCTTGTGTTTCTAAATCTGAACATCCAGCTTCAACCAACAAAACAAAACTTGCAAAGGTTGTCCGTATTGCAAGTTGTGGTGCACTTGCACTTTTGTGTCTTGGGGCTATCTTTACATGTATACACCACCAAATAATATACAGACACAGAATGGATGTCTTTGTTGATGTTTTAGGGGTAGACGAGAGCAAAGTTTCTTTTGGGCAATTGAGAAGATTTTCTTGGCGTGAACTGCAACTTGCTACTAAAAATTTCAGTGAAAGCAATGTAATTGGCCAGGGTGGATTTGGAAAAGTGTACAAAGGAGTACTCTCAGATAATACAAAAGTTGCTGTGAAACGCCTCACTGATTATCCTAATCCTGTTGGAGAGGCTGCATTCGAGAGAGAAGTTCAATTTATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGGTTCTGTACAACGTCAAATGAAAGAATCCTGGTATATCCTTTCATGGAAAATCTAAGCGTAGCATATCGATTGAGAGATTTAAAACCTGATGAGAAAGGCTTGGACTGGCCAACAAGGAAACACATCGCTTTTGGTACAGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTGAAGGCTGCAAATATCCTACTAGATGATGAGTTTGAAGCTGTTCTTGGCGATTTTGGGCTAGCCAAGCTGGTTGATGCATGGAAGACTCATGTTACCACTCAAGTGCGGGGCACAATGGGTCATATTGCCCCAGAATATTTGTCCACTGGAATAGCAACAGAAAAGACAGATGTTTTTGGATATGGCATAACACTTCTTGAACTAGTAACTGGTCAGCGTGCAATAGACCTCTCTAGGCTTGAAGAGGAGGAGGATGTTCTTCTGATTGATCATGTAAAAAAGTTACAGAAAGAAAATAGGCTGGAGGACATTGTGGATAGAAATTTGGAGACTTATGATCCCAAAGAAGTTGAGACCATTCTTCAGGTTGCATTGCTTTGCACCCAAAGCTTTCCTGAGGATCGTCCAACCATGTCAGAAGTAGTAAAAATGCTGCAGGGAGTGGGTTTGGCAGATAGATGGGCTTGCTGGAAGCAACTTGTAGAAGCTGGGACTCAAGAACAAGAATTAGCAGTCATGACTCACCAATTTGTTTGGAATGATGAATCTACAGTTGACCAAGAAGCTATACAGCTTTCAAGAGCAAGATAG 1797 0.409 MFPPSFSRGPLKILTRWLIFLSVLKLSYAIKDPDVEGEALLDFLTDLNDSNKRITDWDSHLVSPCFSWSHVTCRNGHVISLTLASIGFSGTLSPSIAKLKYLVSLELQNNNLSGSLPDYIANLTNLQYLNLADNNFDGSIPATWGQLSSLKHLDLSSNGLTGSIPKQLLSVPLFNFSDTHLHCGSSFEQPCVSKSEHPASTNKTKLAKVVRIASCGALALLCLGAIFTCIHHQIIYRHRMDVFVDVLGVDESKVSFGQLRRFSWRELQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLTDYPNPVGEAAFEREVQFISVAVHRNLLRLIGFCTTSNERILVYPFMENLSVAYRLRDLKPDEKGLDWPTRKHIAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDAWKTHVTTQVRGTMGHIAPEYLSTGIATEKTDVFGYGITLLELVTGQRAIDLSRLEEEEDVLLIDHVKKLQKENRLEDIVDRNLETYDPKEVETILQVALLCTQSFPEDRPTMSEVVKMLQGVGLADRWACWKQLVEAGTQEQELAVMTHQFVWNDESTVDQEAIQLSRAR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00066 598 SUPERFAMILY Protein kinase-like (PK-like) 252 548 IPR011009 -
Gabi4587g00066 598 Gene3D Ribonuclease Inhibitor 33 201 IPR032675 -
Gabi4587g00066 598 Gene3D Transferase(Phosphotransferase) domain 1 351 564 - -
Gabi4587g00066 598 ProSiteProfiles Protein kinase domain profile. 274 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00066 598 SUPERFAMILY L domain-like 37 170 - -
Gabi4587g00066 598 Gene3D Phosphorylase Kinase; domain 1 243 350 - -
Gabi4587g00066 598 SMART serkin_6 274 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00066 598 ProSitePatterns Protein kinases ATP-binding region signature. 280 302 IPR017441 GO:0005524
Gabi4587g00066 598 FunFam Probable LRR receptor-like serine/threonine-protein kinase At5g63710 34 193 - -
Gabi4587g00066 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 397 409 IPR008271 GO:0004672|GO:0006468
Gabi4587g00066 598 FunFam Somatic embryogenesis receptor kinase 1 243 350 - -
Gabi4587g00066 598 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 19 557 - -
Gabi4587g00066 598 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Gabi4587g00066 598 FunFam Somatic embryogenesis receptor-like kinase 1 351 567 - -
Gabi4587g00066 598 Pfam Protein kinase domain 275 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00066 598 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00066 Gabi-Chr4587 781358 786176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00066 33 593 Receptor kinase-like Gene Family AT5G65240 55.612 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi4587g00066 Pkinase 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00066 - - gmx:100799227 1004.59