Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00056 ATGGGAGATGGCAGCGGCGGCGGTAGCCGGTGGAACAAGGCGGAGTGGGTGCAGCAGTATGATCTGATAGGGAAGATTGGTGAAGGCACGTACGGCCTCGTCTTCCTCGCTAAGATCAAGTCACAGTCTCCAAGAAAATCCATCGCCATCAAGAAATTCAAGCAGTCTAAGGATGGCGACGGCGTCTCTCCCACCGCCATCCGCGAAATCATGTTACTGAGGGAAATAGCGCACGAGAACGTTGTCAAGCTTGTCAATGTTCACATCAATCAAGCCGACATGTCTCTCTATCTCGCTTTTGATTATGCTGAACACGATCTTTATGAAATAATTAGACATCATAGGGACAAACTCAACCATTCCATTAATCAATACACTGTTAAATCGTTACTGTGGCAGTTGCTCAATGGACTAAACTATCTGCATAGTAATTGGATGATACATCGAGATTTAAAGCCATCAAATATATTGGTTATGGGTGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCACGCTCCTTTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTACCGTGCACCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTGTGGGATGCATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGGGCAGAAGTCAAAGCTACATCAAATCCCTTTCAGCTCGACCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTGCTTAGCAAATCTTCCATACTGGCAACAAGATCTGCAACATATACAAGGACACAAATATGACAACACCAGCCTCTATAATGCTGTACACCTACCTCCAAAAAGTCCTGCATATGACCTCTTGTCAAAGATGCTTGAATATGATCCTCGAAAGCGCATAACAGCTGCACAAGCTTTGGAGCATGAGTATTTCAAAATTGAACCACTACCTGGGCGGAATGCACTTGTACCCTGTCAACTTGGAGAGAAAATTGTGAATTATCCCACACGTCCAGTGGACACCTCAGTTGATCTTGAAGGAACCAATCTGCCACCTTCACAATCGATGACTGCAGTATCTGGAAGCATGGCTGGTGCTCATGGGTCAAATAAATCTGTCCCTCGGCCAATGAATGTTGTTGGCATGCAAAGAATGCCACCTCAGGCTATGCCAACTTACAATCTCACTTCTCAGGCAGCAATGGGTGGCGGAATGAATCCTGGGACTATTCCTAAGCAACGAGGTGTTCCACAGGCCAATCAGCAACAGTTGAGAAGGAAAGATCAAATGGGGATGCCGGGATACCCTCCACAACAGAAGTCAAGACGTATATAA 1389 0.45 MGDGSGGGSRWNKAEWVQQYDLIGKIGEGTYGLVFLAKIKSQSPRKSIAIKKFKQSKDGDGVSPTAIREIMLLREIAHENVVKLVNVHINQADMSLYLAFDYAEHDLYEIIRHHRDKLNHSINQYTVKSLLWQLLNGLNYLHSNWMIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYHAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATSNPFQLDQLDKIFKVLGHPTLEKWPCLANLPYWQQDLQHIQGHKYDNTSLYNAVHLPPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFKIEPLPGRNALVPCQLGEKIVNYPTRPVDTSVDLEGTNLPPSQSMTAVSGSMAGAHGSNKSVPRPMNVVGMQRMPPQAMPTYNLTSQAAMGGGMNPGTIPKQRGVPQANQQQLRRKDQMGMPGYPPQQKSRRI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00056 462 ProSiteProfiles Protein kinase domain profile. 20 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00056 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Gabi4587g00056 462 SUPERFAMILY Protein kinase-like (PK-like) 15 330 IPR011009 -
Gabi4587g00056 462 CDD STKc_CDK8_like 19 329 - -
Gabi4587g00056 462 SMART serkin_6 20 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00056 462 Gene3D Phosphorylase Kinase; domain 1 8 101 - -
Gabi4587g00056 462 MobiDBLite consensus disorder prediction 431 445 - -
Gabi4587g00056 462 FunFam Putative cyclin-dependent kinase E-1 103 342 - -
Gabi4587g00056 462 MobiDBLite consensus disorder prediction 373 392 - -
Gabi4587g00056 462 Pfam Protein kinase domain 20 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00056 462 ProSitePatterns Protein kinases ATP-binding region signature. 26 52 IPR017441 GO:0005524
Gabi4587g00056 462 MobiDBLite consensus disorder prediction 415 462 - -
Gabi4587g00056 462 PANTHER CELL DIVISION PROTEIN KINASE 18 335 - -
Gabi4587g00056 462 Gene3D Transferase(Phosphotransferase) domain 1 102 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00056 Gabi-Chr4587 617864 640256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00056 13 462 Core Cell Cycle Gene Families AT5G63610 75.328 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Gabi4587g00056 Pkinase 3.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00056 K02208 - gmx:100807993 844.343