Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00054 ATGGGCCAAAAATCTGAAGGCTCAAATTGTAAGTTTGAATCTAATGACAGAACTGATCAGATGGGCAGAGAAAACGTGTCAGCAATGACAAAGGAAGAAGTCAGTGATGATGGTTCCTCAAGTGTTGGGATGGGGGATTTAGATTCTCACTCGCGAATTAGTCTGGAGAAGGAGACAGGCTTGGCAAGTTGTCGTGTGTGCCAGTGTGCTGAATCTGATAAAAGGGGAGATGCCGTGCTAGAATTTTTGGGCATCGCCCCAGTTATAGAAATGTGTAAAATCAAGGGGGAAGTAAGGTCTGATGACAAGGAAATTCCAAAATATATGTCTCTTAACAGCAATATTGAAAACAAAACTGGGATGGTGGAATTTGTAAGCCCTGATGGGGAGGTTTTCATTTGTAAAAATGATTTGGAAATTGGTTTGTCTCATCGGGATACATTAGTGGAACTTGGTTGTTGTTGTAAAAATGACCTTGCTTTAGTGCATTATGCTTGTGCACTCAAGTGGTTTGTTAACCATGGATCTACCATTTGTGAAATATGTGGACATATAGCAAATAATATCAGAATTTCTGACTTCAATAAGGTTGTTGGTTCTTTGAAGGAGTATGCAGCATTGAGGGAAAGAACTGCCAGTGGGGATCCCAGTCCTGCACAAGTTCATGCAAATACTGGTGTGGATCCTGATGCTGTGGCTGCTATCCGTAGGCAACGGCTAAGTGAGATTGCACTATGGTTTTGTCCTCATAATAGTAGTAACAATAACAACAATAGCAATGTGGACCCAGTATCGCAGGTTTTTTCGGAGCAGCCTATGAATATTGTTATAGAAGATGCTGGACCTATGCAGAATCCTGCAACGAAATGGGCCGTGGAAGGCACAGGGATCCTGCTTGCTACAGGGCTTCTTACCATCACCCTTGCATGGCTTATAGCTCCTCGAGTTGGAAAGAAAACTGCAAAAAGTGGTCTTCATATCCTACTTGGAGGTGTTTGTGCTTTAACAGTGGTGGTTTTCTTCCGCTTTTTTGTGCTTACCAGAATCAAGTATGGACCTGCACGTTATTGGGCAATCTTGTTCGTTTTCTGGTTTCTTGTATTTGGAATATGGGCTTCACGGACACACGGTGCCCATACAACGTGA 1146 0.4267 MGQKSEGSNCKFESNDRTDQMGRENVSAMTKEEVSDDGSSSVGMGDLDSHSRISLEKETGLASCRVCQCAESDKRGDAVLEFLGIAPVIEMCKIKGEVRSDDKEIPKYMSLNSNIENKTGMVEFVSPDGEVFICKNDLEIGLSHRDTLVELGCCCKNDLALVHYACALKWFVNHGSTICEICGHIANNIRISDFNKVVGSLKEYAALRERTASGDPSPAQVHANTGVDPDAVAAIRRQRLSEIALWFCPHNSSNNNNNSNVDPVSQVFSEQPMNIVIEDAGPMQNPATKWAVEGTGILLATGLLTITLAWLIAPRVGKKTAKSGLHILLGGVCALTVVVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00054 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 192 IPR013083 -
Gabi4587g00054 381 ProSiteProfiles Zinc finger RING-CH-type profile. 123 189 IPR011016 GO:0008270
Gabi4587g00054 381 SMART ringv_2 133 183 IPR011016 GO:0008270
Gabi4587g00054 381 SUPERFAMILY RING/U-box 146 185 - -
Gabi4587g00054 381 MobiDBLite consensus disorder prediction 1 46 - -
Gabi4587g00054 381 MobiDBLite consensus disorder prediction 32 46 - -
Gabi4587g00054 381 Pfam RING-variant domain 149 182 IPR011016 GO:0008270
Gabi4587g00054 381 PANTHER ZINC FINGER, RING-CH-TYPE 29 348 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00054 21 371 C3H Transcription Factor Family AT5G08750 65.833 4.48e-157 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00054 - - gmx:100805323 551.592