Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00039 ATGCCCAACAACAACACACAGTGCTCACAGAAAGAGAGAATAGAGACTCCGGCGATGAAGTTAACCGGCGACGGCGGTGGAGGTCGAAAGTTCCTGGTTGGTGTCAAGTTGGATTCTCGGAGCCGGGAACTGCTGACGTGGGCTCTCGTCAAAGTTGCCGAGCCCGGCGACCTCGTCATTGCGCTCCACGTCATCGACACCATTACCGACGCAGAGGATACAGGTTCAGCTTCGGTGCTCTCTGTTGTTAAGACTTTTGATTCTGTTTTGGCTGTGTACGAAGGCTTCTGCAACTTGAAGCAGGTTGATCTGAAGCTTAAAGTGTGTAGAGGTGCGTCAGCAAGGAAACTTGTAGTGAAGGAAGCGAAATCGCTTGGTGTTGCGACGGTGATTCTAGAAACTTCTAAGAGCTATCACCCTATCCGTTCATCTTTATATGTTGCCAAGTACTGTGCAAGGAAATTGCCCAAGTGTATCTCTGTTTTAGCAGTTCACAATGGCAAAGTTGCATTCCACAGAGAAGCTACTGGAATGTGTACTCTTCAAGGAAAGTTAAATGAAAGCCCAGCATTGTTAAACAAATATTTGGCTGTTAAAATGAAGAAAAATCTGAAGAATTGTGAATGTTGTACACGGGTATTAGCATTGCCGGAGGATTCTGCAACTAAATTGAAGCCAGGGTTGACTGATGATGGTTTTGAAGAGGAAAATTCACTGGCTTTGGTTCCAATTCAAAAGCTTGATGATGATGATGATCCTAGTTATTCAATCGCGGTGGACAAATCAAACCAGTCAACAGCTGGTTGGTCACTCCTTCGCCAGGTGTTTCTTCCCAACAAGCATATGCGGAAATCTTTAGGGAAAAATTCACCTGCTTTGCAAACGGCATTAAGACAAACCAGCTACCATTCTTCAGCTGTTGTCCATCCAGATCACAAACAGAATATTCACCGGAATTATGATTCCACCCTAGATGGGGAGAGTGGTATCATTTTGCCATTTGGATCTGATGATATTTTTCCTCCTCCCTCCCTTGGCCGTGATTTGAGTGAACTTCCTAAAGAATTGTTGGGTTTACAACAGAAGTACTCATCTTTAAGCAGATTATATAGTTTCCAGGAACTTGTATCTGCAACTGCTAACTTCTCACACGAAAATTTGGTTGGAACAGGTGGTTGTAGTGAGGTTTATAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTAAAAATTTTGAAGTCATCTGAAGTTGTGATAAAAGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCATCACAAGAACATAATATCTCTATTGGGCTTTTGTGTTGAGGGCCATAATTTACTACTGGTTTATGATCTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTTATGGCATCAGAAACGACTCTGGTGCATTTGGTTGGCAAGAGAGGTACAAGGTGGCTGTGGGTGTAGCTGAGGCATTGAACTATCTGCATAACTGCTGTACACCTGCTGTGATCCATAGGGATGTGAAATCTTCAAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTGTCGGATTTCGGACTGGCTAGTTGGAGTTCTTCTTCATCCCATAGTAGTTGTACTGATGTGGCCGGAACTTTTGGATACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGAGAAAATTGATGTATATGCTTTTGGTGTTGTACTTCTTGAGCTTCTCTCTAGTAAGAAACCAATTAACAATGACTGTCCTAAGGGCCAAAAGAGCCTTGTTATGTGGGCAATACCAATTTTGAAGGGTGGGAAGCTTTCCCAGTTGCTTGATCCAAGCCTAGGCAGCGATTACAACCATTGCCATATCGAAAGAATGATTTTGGCTGCTAGTCTTTGCATTAGACGAGCATCTAGATTGCGACCTCAAATCTGCATTATATTGAAACTCCTACGTGGTGATGAAGAAGTGAGAAGTTGGGCAGAACAAGAAGTTGGTGCATCACAGGAACTTGATGGATTTGATGAGGAACCAGTGCCATCTAATATTCAGTCCCATCTGAACCTTGCTTTGCTGGACTTGGAGGATGATACAGATTCTATCAGTAGCACTGAGCAGAATGTCTCATTGGTGGACTACTTGAGTGGAAGATGGAGTCGCTCGTCAAGTTTTGACTAA 2181 0.4315 MPNNNTQCSQKERIETPAMKLTGDGGGGRKFLVGVKLDSRSRELLTWALVKVAEPGDLVIALHVIDTITDAEDTGSASVLSVVKTFDSVLAVYEGFCNLKQVDLKLKVCRGASARKLVVKEAKSLGVATVILETSKSYHPIRSSLYVAKYCARKLPKCISVLAVHNGKVAFHREATGMCTLQGKLNESPALLNKYLAVKMKKNLKNCECCTRVLALPEDSATKLKPGLTDDGFEEENSLALVPIQKLDDDDDPSYSIAVDKSNQSTAGWSLLRQVFLPNKHMRKSLGKNSPALQTALRQTSYHSSAVVHPDHKQNIHRNYDSTLDGESGIILPFGSDDIFPPPSLGRDLSELPKELLGLQQKYSSLSRLYSFQELVSATANFSHENLVGTGGCSEVYRGCLPDGKELAVKILKSSEVVIKEFVQEIEIITTLHHKNIISLLGFCVEGHNLLLVYDLLSRGSLEENLYGIRNDSGAFGWQERYKVAVGVAEALNYLHNCCTPAVIHRDVKSSNILLSDDFEPQLSDFGLASWSSSSSHSSCTDVAGTFGYLAPEYFMHGRVTEKIDVYAFGVVLLELLSSKKPINNDCPKGQKSLVMWAIPILKGGKLSQLLDPSLGSDYNHCHIERMILAASLCIRRASRLRPQICIILKLLRGDEEVRSWAEQEVGASQELDGFDEEPVPSNIQSHLNLALLDLEDDTDSISSTEQNVSLVDYLSGRWSRSSSFD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00039 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Gabi4587g00039 726 FunFam Putative receptor-like serine/threonine-protein kinase 457 668 - -
Gabi4587g00039 726 SMART serkin_6 382 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00039 726 Gene3D HUPs 28 166 IPR014729 -
Gabi4587g00039 726 Pfam Universal stress protein family 29 164 IPR006016 -
Gabi4587g00039 726 SUPERFAMILY Protein kinase-like (PK-like) 363 652 IPR011009 -
Gabi4587g00039 726 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 28 165 - -
Gabi4587g00039 726 ProSiteProfiles Protein kinase domain profile. 382 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00039 726 CDD USP_Like 30 164 - -
Gabi4587g00039 726 Gene3D Phosphorylase Kinase; domain 1 353 456 - -
Gabi4587g00039 726 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 351 456 - -
Gabi4587g00039 726 PANTHER OS08G0249100 PROTEIN 86 673 IPR046958 -
Gabi4587g00039 726 Gene3D Transferase(Phosphotransferase) domain 1 457 669 - -
Gabi4587g00039 726 Pfam Protein kinase domain 384 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00039 Gabi-Chr4587 424887 428426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00039 369 653 Trihelix Transcription Factor Family AT1G68690 43.581 2.50e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4587g00039 Pkinase 1.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00039 - - gmx:100815722 952.97