Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00038 ATGCCCAACAACAACACACAGTGCTCACAGAAAGAGAGAATAGAGACTCCGGCGATGAAGTTAACCGGCGACGGCGGTGGAGGTCGAAAGTTCCTGGTTGGTGTCAAGTTGGATTCTCGGAGCCGGGAACTGCTGACGTGGGCTCTCGTCAAAGTTGCCGAGCCCGGCGACCTCGTCATTGCGCTCCACGTCATCGACACCATTACCGACGCAGAGGATACAGGTTCAGCTTCGGTGCTCTCTGTTGTTAAGACTTTTGATTCTGTTTTGGCTGTGTACGAAGGCTTCTGCAACTTGAAGCAGGTTGATCTGAAGCTTAAAGTGTGTAGAGGTGCGTCAGCAAGGAAACTTGTAGTGAAGGAAGCGAAATCGCTTGGTGTTGCGACGGTGATTCTAGAAACTTCTAAGAGCTATCACCCTATCCGTTCATCTTTATATGTTGCCAAGTACTGTGCAAGGAAATTGCCCAAGTGTATCTCTGTTTTAGCAGTTCACAATGGCAAAGTTGCATTCCACAGAGAAGCTACTGGAATGTGTACTCTTCAAGGAAAGTTAAATGAAAGCCCAGCATTGTTAAACAAATATTTGGCTGTTAAAATGAAGAAAAATCTGAAGAATTGTGAATGTTGTACACGGGTATTAGCATTGCCGGAGGATTCTGCAACTAAATTGAAGCCAGGGTTGACTGATGATGGTTTTGAAGAGGAAAATTCACTGGCTTTGGTTCCAATTCAAAAGCTTGATGATGATGATGATCCTAGTTATTCAATCGCGGTGGACAAATCAAACCAGTCAACAGCTGGTTGGTCACTCCTTCGCCAGGTGTTTCTTCCCAACAAGCATATGCGGAAATCTTTAGGGAAAAATTCACCTGCTTTGCAAACGGCATTAAGACAAACCAGCTACCATTCTTCAGCTGTTGTCCATCCAGATCACAAACAGAATATTCACCGGAATTATGATTCCACCCTAGATGGGGAGAGTGGTATCATTTTGCCATTTGGATCTGATGATATTTTTCCTCCTCCCTCCCTTGGCCGTGATTTGAGTGAACTTCCTAAAGAATTGTTGGGTTTACAACAGAAGTACTCATCTTTAAGCAGATTATATAGTTTCCAGGAACTTGTATCTGCAACTGCTAACTTCTCACACGGTGGTTGTAGTGAGGTTTATAGAGGATGTCTTCCAGATGGCAAGGAATTGGCTGTAAAAATTTTGAAGTCATCTGAAGTTGTGATAAAAGAGTTTGTTCAGGAAATTGAGATCATTACAACTTTGCATCACAAGAACATAATATCTCTATTGGGCTTTTGTGTTGAGGGCCATAATTTACTACTGGTTTATGATCTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTTATGGCATCAGAAACGACTCTGGTGCATTTGGTTGGCAAGAGAGGTACAAGGTGGCTGTGGGTGTAGCTGAGGCATTGAACTATCTGCATAACTGCTGTACACCTGCTGTGATCCATAGGGATGTGAAATCTTCAAATATCCTTCTTTCAGATGATTTTGAGCCTCAGCTGTCGGATTTCGGACTGGCTAGTTGGAGTTCTTCTTCATCCCATAGTAGTTGTACTGATGTGGCCGGAACTTTTGGATACCTAGCTCCTGAATACTTTATGCATGGTAGAGTGACTGAGAAAATTGATGTATATGCTTTTGGTGTTGTACTTCTTGAGCTTCTCTCTAGTAAGAAACCAATTAACAATGACTGTCCTAAGGGCCAAAAGAGCCTTGTTATGTGGGCAATACCAATTTTGAAGGGTGGGAAGCTTTCCCAGTTGCTTGATCCAAGCCTAGGCAGCGATTACAACCATTGCCATATCGAAAGAATGATTTTGGCTGCTAGTCTTTGCATTAGACGAGCATCTAGATTGCGACCTCAAATCTGCATTATATTGAAACTCCTACGTGGTGATGAAGAAGTGAGAAGTTGGGCAGAACAAGAAGTTGGTGCATCACAGGAACTTGATGGATTTGATGAGGAACCAGTGCCATCTAATATTCAGTCCCATCTGAACCTTGCTTTGCTGGACTTGGAGGATGATACAGATTCTATCAGTAGCACTGAGCAGAATGTCTCATTGGTGGACTACTTGAGTGGAAGATGGAGTCGCTCGTCAAGTTTTGACTAA 2163 0.4323 MPNNNTQCSQKERIETPAMKLTGDGGGGRKFLVGVKLDSRSRELLTWALVKVAEPGDLVIALHVIDTITDAEDTGSASVLSVVKTFDSVLAVYEGFCNLKQVDLKLKVCRGASARKLVVKEAKSLGVATVILETSKSYHPIRSSLYVAKYCARKLPKCISVLAVHNGKVAFHREATGMCTLQGKLNESPALLNKYLAVKMKKNLKNCECCTRVLALPEDSATKLKPGLTDDGFEEENSLALVPIQKLDDDDDPSYSIAVDKSNQSTAGWSLLRQVFLPNKHMRKSLGKNSPALQTALRQTSYHSSAVVHPDHKQNIHRNYDSTLDGESGIILPFGSDDIFPPPSLGRDLSELPKELLGLQQKYSSLSRLYSFQELVSATANFSHGGCSEVYRGCLPDGKELAVKILKSSEVVIKEFVQEIEIITTLHHKNIISLLGFCVEGHNLLLVYDLLSRGSLEENLYGIRNDSGAFGWQERYKVAVGVAEALNYLHNCCTPAVIHRDVKSSNILLSDDFEPQLSDFGLASWSSSSSHSSCTDVAGTFGYLAPEYFMHGRVTEKIDVYAFGVVLLELLSSKKPINNDCPKGQKSLVMWAIPILKGGKLSQLLDPSLGSDYNHCHIERMILAASLCIRRASRLRPQICIILKLLRGDEEVRSWAEQEVGASQELDGFDEEPVPSNIQSHLNLALLDLEDDTDSISSTEQNVSLVDYLSGRWSRSSSFD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00038 720 Pfam Universal stress protein family 29 164 IPR006016 -
Gabi4587g00038 720 SUPERFAMILY Protein kinase-like (PK-like) 364 646 IPR011009 -
Gabi4587g00038 720 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 351 450 - -
Gabi4587g00038 720 FunFam Putative receptor-like serine/threonine-protein kinase 451 662 - -
Gabi4587g00038 720 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 28 165 - -
Gabi4587g00038 720 PANTHER OS08G0249100 PROTEIN 86 667 IPR046958 -
Gabi4587g00038 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
Gabi4587g00038 720 Gene3D Phosphorylase Kinase; domain 1 353 450 - -
Gabi4587g00038 720 Gene3D HUPs 28 166 IPR014729 -
Gabi4587g00038 720 ProSiteProfiles Protein kinase domain profile. 376 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00038 720 CDD USP_Like 30 164 - -
Gabi4587g00038 720 Gene3D Transferase(Phosphotransferase) domain 1 451 663 - -
Gabi4587g00038 720 Pfam Protein kinase domain 384 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00038 720 SMART serkin_6 376 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00038 Gabi-Chr4587 424887 428426 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00038 369 647 Trihelix Transcription Factor Family AT1G68690 42.230 5.24e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gabi4587g00038 Pkinase 1.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00038 - - gmx:100815722 937.947