Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00037 ATGGCCAACAAGAGCGGAAAGAAACCACTGAGCCTCAACGATAGCCACAATCGCTTCCTCCAAAACCTCTCTGCTCCCAAACCCTTCGATGAAGACAATAAACCGATCGAAGATGAAGACAAAACTATTCCCCGATTTTCTGCAATCACTGACTTTGATTCTCCAATCGAGGAGGAAAAGAAGACGAAGGTTAAAGTGCAAGGGCGACGCCGCCTCTGCAAGGTTGCGTATGCAGATGACGGTAAAAAAGTGGCGGTTGATGAGTCCAAGTTTCATGACCTCGTCGACCTTGATTCTCCCATTCCTGCACCGAAAAATGTGATCCAGATTGCGGAGAGTGGGGGTAGAAATGAAATTAGGGATATTTTGAATGAACTGAACTCCAAGTTTGAGTTGCTATCAGTTGAGAGGAAGCGTGTGCAGAAGCCGGTTGAGGGTTTCGTTGGAGGGAAAGAAACTCGTGATGATGAGGCTTTAGAGTTTGGGAGTGCGGGGTCTTCATTTTCTCCACAACAGGATCCCTCTGACATCTCGTCGGAGGGGAATAAGAATGATGGTGGTGGTGTTGAATATGATTCAGATGATTCCGTTCAAGTGTTGGATCATTTTGAGCCTGAGAACGATGGTTCTATAACTCTGAGTGGCCCAAAATCTACGTATAAGTTGTCGGGTAAAATTGCAAAAATGTTGTATCCACATCAGCGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTCTGGGTAAAGGTGGAATCTTGGGGGATGACATGGGTTTGGGTAAAACAATGCAGATTTGTGGCTTTCTAGCTGGACTATTTCATTCCCGTTTAATTAGAAGGGCATTGATTGTGGCCCCAAAAACCTTACTGCCCCATTGGATCAAAGAATTATCAGCTGTTGGTCTCTCTGAGAAGATAAGAGAATATTTCGGAACTTCTACAAAAGCCCGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTCACAACATATGATATTGTCCGCAACAATTCTAAGTCCTTACAAGGGGATAATTATTTTGATGATGAGGATGGTGAAGATGGCATTACATGGGACTACATGATACTTGATGAGGGGCACCTTATAAAGAACCCGAGCACACAACGAGCTAAAAGTTTGCTTGAGATACCAAGTGCTCATCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTGAAGGAGTTGTGGGCATTGTTCAGTTTCTGTTGCCCTGAGTTGCTTGGTGACAATAAATGGTTCAAAGAAAAATTTGAATCACCCATACTTCGTGGAAATGACAAAAATGCTTCTGATAGAGAGAAGCGTATTGGTTCATCTGTAGCAAAGGAGCTAAGAGATCGGATTCAGCCTTACTTTTTGAGACGTTTAAAGAGTGAGGTTTTCAATCAAGATGATGAGAAAACAACCGCAAAACTTTCTAAGAAACGAGAGATGATTGTGTGGCTTCGATTGACCAGTACTCAGCGGCATCTTTATGAAGCATTTTTGAGGAGTGAGATTGTTCTCTCAGCTTTTGATGGGTCCCCACTGGCTGCCCTTACGATTTTGAAAAAAATATGTGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTCTTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAGGTTAATGTTGCAGAAAAATTGGCAAAGCACATAGCAGATGTTGCAGAAACAGATAAGTTTAAAGATGAGCACGATGTATCATGCAAAATTTCCTTCATCATGTCATTATTGGATAATTTGATCCCAGAAGGTCATAATGTGCTTATCTTTTCTCAGACTCGCAAGATGCTTAATCTTATACAGGAATGCCTAGTATCCAAAGGTTATGAATTTTTACGAATTGATGGCACAACAAAAGCCAGTGACAGACTAAGGATTGTTAATGAATTCCAAGAAGGTATTGGAGCTCCTATATTTCTTTTGACATCTCAGGTTGGTGGTTTGGGTCTGACACTTACAAGAGCAGATCGTGTGATAGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAATCAAAGTGTTGACCGTGCATATCGTATTGGTCAAAAGAAAGATGTTATTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAAGGAGGATTATTCAAAACAGCTACTGAACATAAAGAACAAATTCGGTACTTTAGCCAACAGGATCTTAGGGATATTTTCAGCCTCCCAAAAGAAGGATTTGATGTATCTGTTACCCAACGACAATTGGATGAGGAACATGATCGTCAACATACAGTGGATGATTCCTTCAAAGCGCATATAGAGTTCCTGAAAAGTCAAGGCATAGCTGGAGTTAGTCACCACAGTTTACTCTTTTCCAAGACAGCACCGGTTCAAGCTGCTCCTGAGGATGATGAAATAACAAAGAGTCATAGGACTAAATATATTGGAACTTCAATATCATCTGCACATGAGCATATTACTGATGGAGCTGAGTTTGCATTTAATCCGAAGGATGTCAATTTAAGAAAAAAAGGTTCTCCTCCTAGCAGTGCTGGTAAATCGACCGAGTCAGAAATCAAGGATAGAATTCATCGGCTCTCACAAACACTCTCAAATACGGTGATGATTTCTAAATTACCAGACAATGGGGAGAAACTACGAAAACAGATTGCGGAGCTGAATTTAGAGCTCGCTAAACTGAAGATGGAAGAAAGAGACGTTGCTGATTTAGATGATTTTACTGATGAATTTCAAAGAGTGTTGAACGTATAG 2811 0.413 MANKSGKKPLSLNDSHNRFLQNLSAPKPFDEDNKPIEDEDKTIPRFSAITDFDSPIEEEKKTKVKVQGRRRLCKVAYADDGKKVAVDESKFHDLVDLDSPIPAPKNVIQIAESGGRNEIRDILNELNSKFELLSVERKRVQKPVEGFVGGKETRDDEALEFGSAGSSFSPQQDPSDISSEGNKNDGGGVEYDSDDSVQVLDHFEPENDGSITLSGPKSTYKLSGKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALIVAPKTLLPHWIKELSAVGLSEKIREYFGTSTKAREYELQYILQDKGVLLTTYDIVRNNSKSLQGDNYFDDEDGEDGITWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFSFCCPELLGDNKWFKEKFESPILRGNDKNASDREKRIGSSVAKELRDRIQPYFLRRLKSEVFNQDDEKTTAKLSKKREMIVWLRLTSTQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAKHIADVAETDKFKDEHDVSCKISFIMSLLDNLIPEGHNVLIFSQTRKMLNLIQECLVSKGYEFLRIDGTTKASDRLRIVNEFQEGIGAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRDIFSLPKEGFDVSVTQRQLDEEHDRQHTVDDSFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQAAPEDDEITKSHRTKYIGTSISSAHEHITDGAEFAFNPKDVNLRKKGSPPSSAGKSTESEIKDRIHRLSQTLSNTVMISKLPDNGEKLRKQIAELNLELAKLKMEERDVADLDDFTDEFQRVLNV 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00037 936 CDD DEXHc_ERCC6L 230 467 - -
Gabi4587g00037 936 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4587g00037 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 467 IPR027417 -
Gabi4587g00037 936 Gene3D - 214 488 IPR038718 -
Gabi4587g00037 936 Gene3D - 489 785 IPR027417 -
Gabi4587g00037 936 MobiDBLite consensus disorder prediction 1 22 - -
Gabi4587g00037 936 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 774 IPR027417 -
Gabi4587g00037 936 SMART ultradead3 225 428 IPR014001 -
Gabi4587g00037 936 FunFam Protein CHROMATIN REMODELING 24 209 487 - -
Gabi4587g00037 936 PANTHER SNF2/RAD54 FAMILY MEMBER 100 916 - -
Gabi4587g00037 936 MobiDBLite consensus disorder prediction 851 871 - -
Gabi4587g00037 936 CDD SF2_C_SNF 579 710 - -
Gabi4587g00037 936 MobiDBLite consensus disorder prediction 164 182 - -
Gabi4587g00037 936 Pfam Helicase conserved C-terminal domain 587 699 IPR001650 -
Gabi4587g00037 936 SMART helicmild6 616 699 IPR001650 -
Gabi4587g00037 936 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 242 417 IPR014001 -
Gabi4587g00037 936 Coils Coil 896 923 - -
Gabi4587g00037 936 MobiDBLite consensus disorder prediction 161 191 - -
Gabi4587g00037 936 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 590 749 IPR001650 -
Gabi4587g00037 936 Pfam SNF2-related domain 245 537 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00037 Gabi-Chr4587 412760 423033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00037 230 753 RAD5 or RAD16-like Gene Family AT1G02670 24.825 4.05e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi4587g00037 SNF2_N 2.9e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00037 K20093 - gmx:100779283 1504.96