Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00029 ATGGAAGACGAGAGCCATAGCAGTTTGCCAAATGGGTTCAGCACAGGAAGCCCTGAAAGTCCTTGCTTAAAGACAAACAACAACAACAACAACAACAATAATCACAATAGCAACAAAGAACAGGATCGCTTTCTCCCTATAGCCAATGTTGGTAGAATCATGAAAAAAGTGATTCCTGCTAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAAGAATGTGTATCAGAGTTCATCAGTTTTGTCACTGGGGAAGCATCTGACAAATGTCAAAGAGAAAAAAGGAAGACCATTAATGGGGATGATATCATTTGGGCCATTACAACCTTAGGCTTTGAGGATTATGTTGAACCATTAAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTTAATATTCCAAAGCAACAACGTTCTGAGCAAAGGCTACACCAACACCAACACCACCACCATAACCAAGATGAAAATAATCAACCATTCAACAGTGTATATACTTCAACGAATCTCATTTCTCAGCCTCCATATGTTTCCACAGATCAGCCATTTTCATTATCGTTCTCCCCAAATTCAATTCAAAAACAGTTACGGCCGCAAGACCAGATTGATTCGATGGGGCATTGGTTTGAGTAA 642 0.3925 MEDESHSSLPNGFSTGSPESPCLKTNNNNNNNNNHNSNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVEPLKSYLQKYREIEGEKLNIPKQQRSEQRLHQHQHHHHNQDENNQPFNSVYTSTNLISQPPYVSTDQPFSLSFSPNSIQKQLRPQDQIDSMGHWFE 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00029 213 FunFam Nuclear transcription factor Y subunit B-3 33 159 - -
Gabi4587g00029 213 MobiDBLite consensus disorder prediction 140 159 - -
Gabi4587g00029 213 MobiDBLite consensus disorder prediction 1 42 - -
Gabi4587g00029 213 SUPERFAMILY Histone-fold 41 148 IPR009072 GO:0046982
Gabi4587g00029 213 MobiDBLite consensus disorder prediction 191 213 - -
Gabi4587g00029 213 MobiDBLite consensus disorder prediction 7 42 - -
Gabi4587g00029 213 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Gabi4587g00029 213 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Gabi4587g00029 213 PRINTS CCAAT-binding transcription factor subunit A signature 110 128 - -
Gabi4587g00029 213 MobiDBLite consensus disorder prediction 140 168 - -
Gabi4587g00029 213 ProSitePatterns NF-YB/HAP3 subunit signature. 75 91 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4587g00029 213 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4587g00029 213 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 44 108 IPR003958 -
Gabi4587g00029 213 Gene3D Histone, subunit A 31 166 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00029 Gabi-Chr4587 323376 324017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00029 3 211 CCAAT-HAP3 Transcription Factor Family AT2G13570 61.261 2.38e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4587g00029 CBFD_NFYB_HMF 3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00029 K08065 - gmx:100778216 332.798