Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00021 ATGCAGAGTTGTGAGGTTGAGGCCATTGGCATCAACTACAAGATCCACACACACAAAACGGAGCACCCTTTTAAAATCTTCAGCAAGTCTCCACAACTGGATATTGAAGAAGATGGTCAAGAAGCTGAAGAGGAAGCAAAAGGTGAACAAAGTTGCAGTGGAGTTAGGCATGTGCTGAAGAATGTGAGTTGCCAAGCCAAGCCATGGGAAATCCTAGCAATTGTTGGGCCAAGTGGAGCTGGAAAATCATCACTGCTTGAGATTCTTGCTGGTAAACTTAATCCACAAAGTGGGTCTGTGTTGGTGAACCACAAGCCTGTGGACAAAGCTAAGTTCAGGAAGCTTTCAGGGTATGTTACACAAAAGGATATTTTGTTTCCCTTACTTACAGTTGAAGAAACAATGATGTTTAGTGCAAAGCTAAGACTAAAGCTTCCTCAAAAAGAAATATGTTCCAGGGTCAAGTCACTGATTCAAGAGCTTGGACTTGACCATGTTGCTGGGACTCGAATTGGCGATGACAGGGTCCGAGGTATATCTGGTGGTGAGAGGCGTAGAGTTTCTATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTTATTCTTGATGAACCAACTTCAGGGCTTGACAGTACATCTGCTCTTCAAATAATTGATATGCTTAAGGTCATGGCTGACACTAGGGGCAGAACCATAATCCTTAGCATCCATCAACCTGGGTTCAGAATTGTGAAGCTGTTCCATTCAGTGTTGTTGTTAGCCAATGGCTCTGTGTTATACCATGGCACTACAGATTTGCTTGGTGTGAATCTAATATTAATGGGTTTAGAGCTTCCCCTTCATGTTAATGTAGTAGAATTTGCCATTGAGTCCATTGACACCATTCAGCAACAACAAAAATGGACAATGCAACAGAAGAAAGGAGATGATGAACAAGGTGAGAGTAGAAGTGGTAAGTTTACTCTGCAACAGCTCTTTCAACAGTCCAAGGTAATTGATGAAGAAATCATCAACGCTGGAATCGATTACACTTGTGATTTTGCTAATTCTAGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCTTTCGTACAAAAGAGCTCTTTGCATGTAGGACAATTCAGATGCTGATTTCTGGGCTCGTTTTGGGGTCCATATTTTGCAACCTCAAGGATGATCTAGGGGGAGCAGAAGAAAGGGTAGGTCTATTTGCTTTCATATTAACGTTTTTGTTATCAAGCAGCATAGAAGCTCTACCAATTTTTATGCAAGAAAGGGAGATTCTAATGAAGGAGACATCTTGTGGAAGCTACCGTGTATCATCCTATGCTATTGCCAATGGCCTAGTTTATTTGCCTTTTCTTCTCATCCTAGCTATTTTGTTCACAATACCCTTATACTGGCTTGTTGGGCTCAATCGGAATTTCACAGCGTTTTTGCACTTTTTGTTGCTGATATGGCTGATTCTTTATACGGCCAATTCAGTTGTGGTGTGTTTCAGTGCTCTGGTGCCTAATTTCATTGTTGGAAATTCAGTGATTGCTGGTGTCATTGGATCATTCTTCTTGTTCTCTGGATACTTCATATCTAAGAATGAAATTCCAAATTACTGGATTTTCATGCATTATATATCTCTGTTTAAGTATCCGTTTGAAGGGTTCCTGATCAATGAGTTCTCCAACTCAGGGAAATGCTTAGAGTACATGTTTGGGGCATGTATGAAGAGCGGAGAGGATGTGCTTAAAGAAGAAGGTTATGGGGGAGAGAGTAGTAGATGGAAGAATGTTGGGGTCACGGTGTGCTTCATCATGGTCTACAGGTTCATTTCTTATGTTATTCTTAGATACAGATGCTCGCAGAGGGGGTTCAGCAGTGTTGTCATCCTCTAG 1902 0.4122 MQSCEVEAIGINYKIHTHKTEHPFKIFSKSPQLDIEEDGQEAEEEAKGEQSCSGVRHVLKNVSCQAKPWEILAIVGPSGAGKSSLLEILAGKLNPQSGSVLVNHKPVDKAKFRKLSGYVTQKDILFPLLTVEETMMFSAKLRLKLPQKEICSRVKSLIQELGLDHVAGTRIGDDRVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALQIIDMLKVMADTRGRTIILSIHQPGFRIVKLFHSVLLLANGSVLYHGTTDLLGVNLILMGLELPLHVNVVEFAIESIDTIQQQQKWTMQQKKGDDEQGESRSGKFTLQQLFQQSKVIDEEIINAGIDYTCDFANSRLRETMILTHRFSKNIFRTKELFACRTIQMLISGLVLGSIFCNLKDDLGGAEERVGLFAFILTFLLSSSIEALPIFMQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTIPLYWLVGLNRNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSFFLFSGYFISKNEIPNYWIFMHYISLFKYPFEGFLINEFSNSGKCLEYMFGACMKSGEDVLKEEGYGGESSRWKNVGVTVCFIMVYRFISYVILRYRCSQRGFSSVVIL 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00021 633 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 40 280 IPR003439 GO:0005524
Gabi4587g00021 633 Gene3D - 48 326 IPR027417 -
Gabi4587g00021 633 Pfam ABC-2 type transporter 355 563 IPR013525 GO:0016020|GO:0140359
Gabi4587g00021 633 FunFam ABC transporter G family member 5 44 304 - -
Gabi4587g00021 633 Pfam ABC transporter 59 207 IPR003439 GO:0005524
Gabi4587g00021 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 265 IPR027417 -
Gabi4587g00021 633 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524|GO:0016887
Gabi4587g00021 633 CDD ABCG_EPDR 53 262 - -
Gabi4587g00021 633 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 613 - -
Gabi4587g00021 633 SMART AAA_5 68 255 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00021 Gabi-Chr4587 262155 264095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00021 58 267 Calmodulin-binding Proteins AT2G36910 30.909 8.62e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00021 K05681 - gmx:100789722 1077