Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00019 ATGGTGGGTGGAAGTGTTAACCTTCCTCCAGGGTTTTGCTTCTGTCCAACAGATGAAGAACTTGTACTTCACTTTCTCTATTCCAAAACTTCTCTACCAACCCATCCCAACATCATACCTGATCTTGACATGTCTCTGCTTGATCCTTGGGAATTAAATGGTAAAGCATTGTCAAGTGGAAATCAACACTATTTCTTCACCGAAGTGAAGGAAAACAGATCCACAAAAATTGGATATTGGAAGGAAATAGGAGTCGCCGAAACTATTGTCTCAGCCGGTGATAAGAAAGTGGGAATCAAGAAGTACCTCGTGTTCAACCTCGGGGAATCTCCACGTGGCACTGAAACAAGTTGGGTAATGCAAGAATATCATATTTGCTCATCTGGGTTTAACACTGCATCTTATGGAAGTTCTCGAAGAGGACAAAAACCTGATGAAAGTAGGAGCAAATGGGTTTTATGCAGAGTCTATGAGAAGAAGATGTCACAATCTGAACAAGGTGCAGAGTGTTATAGCGATGATGACGACAGTGGAACAGAGATTTCATGGCTAGACGAAGTTTATATGTCGTTAGATGATGATCTTGAAGAAATATATAAGCCTGCAAAATTAAATTAA 618 0.4029 MVGGSVNLPPGFCFCPTDEELVLHFLYSKTSLPTHPNIIPDLDMSLLDPWELNGKALSSGNQHYFFTEVKENRSTKIGYWKEIGVAETIVSAGDKKVGIKKYLVFNLGESPRGTETSWVMQEYHICSSGFNTASYGSSRRGQKPDESRSKWVLCRVYEKKMSQSEQGAECYSDDDDSGTEISWLDEVYMSLDDDLEEIYKPAKLN 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00019 205 PANTHER NAC TRANSCRIPTION FACTOR 56 8 173 - -
Gabi4587g00019 205 Pfam No apical meristem (NAM) protein 9 125 IPR003441 GO:0003677|GO:0006355
Gabi4587g00019 205 ProSiteProfiles NAC domain profile. 8 159 IPR003441 GO:0003677|GO:0006355
Gabi4587g00019 205 Gene3D NAC domain 17 163 IPR036093 GO:0003677|GO:0006355
Gabi4587g00019 205 SUPERFAMILY NAC domain 4 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00019 Gabi-Chr4587 245495 246725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00019 4 163 NAC Transcription Factor Family AT1G61110 40.588 1.66e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi4587g00019 NAM 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00019 - - gmx:100779578 323.553