Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00017 ATGAATGAATTTGAAGATACCATTCCCCACTTATTCAGATGCCCGATCAGTTTAGATTTGTTTGAAGATCCTGTAACTTTATGCACGGGCCAAACCTATGACAGGTCAAGCATAGAAAAATGGCTGGCTGCAGGTAACTTCACATGCCCTGTCACAATGCAGAAGCTTCATGATCTATCCTTTGTTCCAAATCACACTCTTCGCCACTTGATCGATCAGTGGCTTCAACTGAGTCTCCAATTTGACCCTGGTAACTCTGCAACTGCAACTATCTATTCTTTAGCTGCTCTGAAACGCACCCTTGAATCTCATGAGAGCAACTTCGAGAACAAGCTTCAAGCACTTGAGAAAATCAGTGTCTTATCTGATGAGTATTGTTCTTTTAAGAAATCATGTTTCCTCCAATTGGATTTCTTACCACTACTCTTGGAACTAGTTTTTGGAAGAGTAGATGCTCAAGTATTAAAAAATCACATGGTGTTTATAGAGCTAGCACTTTGTTGCATTCTAAAATTGCTTCCTCTAGGTAGTTTGGATCCTCTAAATATGATCAAAGATGAGTCAAAATTAGCCACATTTATTCTATTATTTCAAAAGGGAACTAGCTCGGTTAAGATTAGCTTGTGTCATCTTATAGAGTCAGCATCATCATCTCAGACAGAAGAGTTATGTTGTGTTCTTGGAAACTCTCGCGTACTAGTGCATGAGATTGTTCTAGTTGCTAGCCAAAATTGTGAGGCTTCTGAGGATGCAATTAAAGGCTTATCTGCACTGTGTTCTTTGCAATGTAACAGAGAGAGTTTAGTGAGAGGAGGAGCAATAGATGGGATCATAACATACATTTCCTCATCAGGTTCTGAAAGAAGAAAGAAGAAGTTGGCACCACTGGCAATGGCAACAGCAGAGAAACTTTTGGAGCTAGAAAGTGCTAAAGTGGCATTGGTGAATCACCCAAATGGTATTGAAACTCTGGTGAATATGGTTTTCAGGGTATCTGATCAAGAAAGAAGTGAAAGTGCTGTTGAGCTACTTTTAATTGTTTGTGGTGATTTTGGGCGTGCAAGAGAGGAAGCCATTGGGGCCGGAGTTTTGACTCGGTTGCTATTGCTTCTGCAGAGTCAGTCTAGTACCACAACAAAATCAAAGGCAAGAATGCTGCTCAAATTGCTAAGAAACAAGTGGAATGAAGAGCCAAAGCAGACGTAG 1206 0.4038 MNEFEDTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIEKWLAAGNFTCPVTMQKLHDLSFVPNHTLRHLIDQWLQLSLQFDPGNSATATIYSLAALKRTLESHESNFENKLQALEKISVLSDEYCSFKKSCFLQLDFLPLLLELVFGRVDAQVLKNHMVFIELALCCILKLLPLGSLDPLNMIKDESKLATFILLFQKGTSSVKISLCHLIESASSSQTEELCCVLGNSRVLVHEIVLVASQNCEASEDAIKGLSALCSLQCNRESLVRGGAIDGIITYISSSGSERRKKKLAPLAMATAEKLLELESAKVALVNHPNGIETLVNMVFRVSDQERSESAVELLLIVCGDFGRAREEAIGAGVLTRLLLLLQSQSSTTTKSKARMLLKLLRNKWNEEPKQT 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00017 401 SUPERFAMILY ARM repeat 97 387 IPR016024 -
Gabi4587g00017 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gabi4587g00017 401 SMART Ubox_2 11 74 IPR003613 GO:0004842|GO:0016567
Gabi4587g00017 401 FunFam RING-type E3 ubiquitin transferase 8 103 - -
Gabi4587g00017 401 Pfam U-box domain 8 76 IPR003613 GO:0004842|GO:0016567
Gabi4587g00017 401 CDD RING-Ubox_PUB 9 56 IPR045210 -
Gabi4587g00017 401 Gene3D - 237 401 IPR011989 -
Gabi4587g00017 401 ProSiteProfiles U-box domain profile. 7 81 IPR003613 GO:0004842|GO:0016567
Gabi4587g00017 401 PANTHER WDSAM1 PROTEIN 8 398 IPR045185 GO:0061630
Gabi4587g00017 401 Coils Coil 94 118 - -
Gabi4587g00017 401 SUPERFAMILY RING/U-box 2 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00017 Gabi-Chr4587 221610 222815 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00017 8 396 U-box Gene Family AT3G19380 33.496 4.87e-41 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00017 - - gmx:100805322 521.546