Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4587g00011 ATGCCGGCTTGGTGGAGTAGAAAGTCGAGTAAGAACAAGCAAGAGCATGAGGATAAGGAAGAAGAAGAAGAAGAGCCACGTGGCGGCCTTCAATTTAATTTCATGAAATCTCCAATTACCATTAAGAACGGCGATAAGAAGAAGAAGAAGAAGAACAGCTTCGACGAGCTCTTCAATCGGAATTCGCCCAGGACCAGCAATGATTTCAATGGTGGCGGCGCCGCCGAGAAGAAAGACCTTCCCTTGCCTCTCCCCGCCGATCATGCCGTCGGATCTCCTTCTATCTCCGGTTCTAGCTTCAGCTCCTCTGTCTCCTACGACGATCATCCAATCTCTCCTCAATTTAATGCCAACAGAGGACAAGATGATATAAAGTTCAATGTGAGGTCAAAAAGCCCAGGTCCTGGGTCAAGAGGACCCACCAGCCCTACATCACCTCTTCATCCAAGATTGCATGTTTTGAGTCTTGACTCACCTACAGGAAAGCAAGAAGATGGAAGGAGTCAGTGCCATCCATTGCCTCTTCCACCAGGTTCTCCTACTAGTCCTTCTGCTCTTTCCAACACACGAGCAAATGGACAGTTAGAAAACATTTCCAGTAATCTGTCCAAGTGGAAGAAAGGGAAGCTTCTAGGACGGGGAACTTTTGGGCATGTTTATCTGGGATTCAATAGTGAAAACGGACAAATGTGTGCAATAAAAGAAGTCAGGGTTGTCTCTGATGATCAAACATCAAAAGAGTGCCTCAAACAACTTAACCAGGAGATAAATTTGCTTAGTCATTTTTCACATCCAAACATTGTTCAATACTATGGGAGTGAACTGGTAGAAGAATCACTTTCTGTTTATTTGGAATATGTCTCTGGCGGTTCTATCCATAAATTGCTTCAAGAATATGGTTCATTTAAGGAGCCTGTTATTCAAAATTATACCAGGCAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAATACAGTACACAGGGATATCAAAGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGATTTTGGAATGGCTAAACATATAAATTCTTCTGCCTCAATGCTTTCATTCAAAGGAAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATGCAAACGGCTATAGCCTTCCAGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCTAAGCCTCCATGGAGTCAGTATGAAGGGGTAGCTGCCATATTTAAAATTGGGAACAGTAAAGACATGCCTGAAATCCCCGAGCATCTTTCAAATGATGCAAAGAATTTCATTAAGCTATGCTTAAATAGGGACCCATTAGCTCGCCCAACAGCCCTAAAGTTACTAGACCATCCCTTCATTCGAGATCAATCAGCAACAAAAGCTGCAAATGTGAGCATAACCAGAGATGCTTTCCCTTACATGTTTGATGGAAGCAGGACTCCGCCTGTTTTTGAGCTTCATTCCAATCGAACAAGTATAACTTCACTTGATGGAGATTATGCAACAAAGCCAGCTCTTGCAGCTCCACGTACATCAAGGAGTCCAAGAGATAACTCAAGAATGATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGACATTATGGGCCAGCACATCAGAGCTGTTTCTTTTCTCCTCCTCATCCAAGTTACACAATAATGGGACAAAATAGTTACACTCCAGTGAGATCAAATGCTACATTCACTCTTGATCCTTGGCATGAATCATCTCTATACAAAGCCCATACACCACCTGGTGGATCTCCAAGAATGAGATTCATTTGA 1815 0.4309 MPAWWSRKSSKNKQEHEDKEEEEEEPRGGLQFNFMKSPITIKNGDKKKKKKNSFDELFNRNSPRTSNDFNGGGAAEKKDLPLPLPADHAVGSPSISGSSFSSSVSYDDHPISPQFNANRGQDDIKFNVRSKSPGPGSRGPTSPTSPLHPRLHVLSLDSPTGKQEDGRSQCHPLPLPPGSPTSPSALSNTRANGQLENISSNLSKWKKGKLLGRGTFGHVYLGFNSENGQMCAIKEVRVVSDDQTSKECLKQLNQEINLLSHFSHPNIVQYYGSELVEESLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYTRQIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSASMLSFKGSPYWMAPEVVMNANGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKNFIKLCLNRDPLARPTALKLLDHPFIRDQSATKAANVSITRDAFPYMFDGSRTPPVFELHSNRTSITSLDGDYATKPALAAPRTSRSPRDNSRMITSLPVSPSSSPLRHYGPAHQSCFFSPPHPSYTIMGQNSYTPVRSNATFTLDPWHESSLYKAHTPPGGSPRMRFI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4587g00011 604 SMART serkin_6 205 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00011 604 Gene3D Transferase(Phosphotransferase) domain 1 202 481 - -
Gabi4587g00011 604 Pfam Protein kinase domain 206 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00011 604 MobiDBLite consensus disorder prediction 92 123 - -
Gabi4587g00011 604 MobiDBLite consensus disorder prediction 1 189 - -
Gabi4587g00011 604 SUPERFAMILY Protein kinase-like (PK-like) 202 541 IPR011009 -
Gabi4587g00011 604 ProSitePatterns Protein kinases ATP-binding region signature. 211 234 IPR017441 GO:0005524
Gabi4587g00011 604 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 469 - -
Gabi4587g00011 604 MobiDBLite consensus disorder prediction 514 541 - -
Gabi4587g00011 604 MobiDBLite consensus disorder prediction 520 541 - -
Gabi4587g00011 604 ProSiteProfiles Protein kinase domain profile. 205 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4587g00011 604 MobiDBLite consensus disorder prediction 9 29 - -
Gabi4587g00011 604 CDD STKc_MEKK1_plant 204 461 - -
Gabi4587g00011 604 FunFam Mitogen-activated protein kinase kinase kinase 203 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4587g00011 Gabi-Chr4587 183612 189000 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4587g00011 1 524 MAP Kinase Kinase Kinase AT1G53570 58.198 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi4587g00011 Pkinase 8.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4587g00011 K04421 - gmx:100787064 888.256