Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi457g00001 ATGGACTTTGCAGTAACAACGTCTACAGATGCAACGACAGTACTGAGGATGTTGAGAGAAAACAAGTTTGACCTTGTGATCAGTGAACTACACATGCCTGAAATTGAAGGACTTAAGCTGCTTAAGCTCATGCAACCTATGGACATACCTGTTATATTGTTCTCCATTGATTATGACAGAAAGTTGGCGATGGAAGCAGTTACTCTGGGAGCATGTGATTATTTGCAGAAACCAATTAGAATGGAAGAGCTGCAGAATATTTGGCAGCATGTATTCAAAAAGAAGATTAATTCTAAGAAGCAGGAAGAAAATGAGGATGACGACTATAAAGAGCTTGGTCATAACAAGGAGCACAAAGCAATCCAAAAGAAGCATCGGGTTATTTGGACGGAGGAGCTGCACCAGAGTTTTTTGGCCGCTGTTAATCAGTTAGGAGGTGTTGACAAGGCTGTAACTAAACAAGTTCTTCAAGTGATGAAGGTTGAGGAGCTTACTAGGGCGAATGTGGCCAGCCATCTTCAGAAGTATAGAAAAAGTCTGAACAAAATCAGCTCTAAGCCAACTCAACAAGTTAATAACGTCAGTGCTTTTAGATCTTCTTCACCTGGTGGGATGATTAGAAGATTGGACACTCCTGCTGTTGTGCCAGAGTTGCCTTCTTCTGCAACTCTTCAATTGGATCATGCACAGAACTTAAACAACTCAACCAATGATCAACGTAATTTCCAATCAGCCTTAGTTTATGATAATCAAAATAGTTTACTGGGATTTCCAATGTTTGGGGAGCTTGACCAACTGCTTTGGAATGACATGAGTTTTGCACCCTTGCAAGGAGGGAATCTGAGTAGGAATGAGGGTGTTGAACCTTTTAGGCAGGCTATAAGGCCTCCTAATATATATGACATGAGTTTTTCACCCTTGCAAGGAAGGAATCTGAGTAGTGTTACAAATGCTCCTGGGCAAACGAGTAATAATGTGCCTTTTCAGAGGTTGGATGACCAAAGACAGGATGGCAGTCATCCTTAA 1026 0.4133 MDFAVTTSTDATTVLRMLRENKFDLVISELHMPEIEGLKLLKLMQPMDIPVILFSIDYDRKLAMEAVTLGACDYLQKPIRMEELQNIWQHVFKKKINSKKQEENEDDDYKELGHNKEHKAIQKKHRVIWTEELHQSFLAAVNQLGGVDKAVTKQVLQVMKVEELTRANVASHLQKYRKSLNKISSKPTQQVNNVSAFRSSSPGGMIRRLDTPAVVPELPSSATLQLDHAQNLNNSTNDQRNFQSALVYDNQNSLLGFPMFGELDQLLWNDMSFAPLQGGNLSRNEGVEPFRQAIRPPNIYDMSFSPLQGRNLSSVTNAPGQTSNNVPFQRLDDQRQDGSHP 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi457g00001 341 MobiDBLite consensus disorder prediction 310 332 - -
Gabi457g00001 341 SUPERFAMILY CheY-like 2 102 IPR011006 -
Gabi457g00001 341 PANTHER TWO-COMPONENT RESPONSE REGULATOR 3 218 IPR045279 GO:0009736
Gabi457g00001 341 Pfam Response regulator receiver domain 3 86 IPR001789 GO:0000160
Gabi457g00001 341 Gene3D - 1 124 - -
Gabi457g00001 341 Gene3D - 125 184 - -
Gabi457g00001 341 ProSiteProfiles Response regulatory domain profile. 1 92 IPR001789 GO:0000160
Gabi457g00001 341 CDD REC_typeB_ARR-like 1 92 - -
Gabi457g00001 341 FunFam Two-component response regulator 120 184 - -
Gabi457g00001 341 SUPERFAMILY Homeodomain-like 122 182 IPR009057 -
Gabi457g00001 341 MobiDBLite consensus disorder prediction 310 341 - -
Gabi457g00001 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 124 178 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi457g00001 Gabi-Chr457 10066 12185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi457g00001 3 195 Response Regulator Gene Family AT4G31920 47.664 8.64e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi457g00001 Response_reg 7.4e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi457g00001 K14491 - vvi:100250889 234.958