Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00060 ATGGTGAGAGCCCCTAGTTACGACAAAAGTGGACAAAGGAAAGGCACGTGGACACCTGAGGAAGACATGAAGTTGATTGCTTATGTTACTAGGTATGGCCACTGGAATTGGAGCCTACTCCCCAAGTTCGCAGGTCTTGCAAGGTCTGGGAAGAGTTGCAGACTGAGGTGGATGAACTATCTAAGGCCACACATCAAAAGAGGGGACTATAGTCAAGAAGAAGATGAAACTATTATCAGACTTCACGAGAAGCTGGGCAATAGATGGTCCATGATTGCTTCTCATTTGCCAGGGAGAACGGATAACGAAATAAAGAATCACTGGCACACAACCCTGAAGAAGCGTTTTGAACCCAAGTCAACCAAAGTCTCTAACTCAAAGAATCACTCCCCAATGGAAGACAAGCAACTACAGAGAGAGTCAGAGAACAGTGGTGGTTCCGATACCTGTCCATATTCTCCACAGCCATCTTCTAGCGAATTCTCCTGCATAACAGGAGATACTGTAGCTGACAAAAATCACGAAAATCGGATTCTAGAAGATGAACTTTCTTTTCTGGATGCATATATAGAGCCCGTGAGTGCAAATTTCTGGACAGAGCCATATATGACTGACATTTCCTATGTCCCTCCTACCGGAGCAGCTGTGCCCTTGGGTTGTGAACTTGAATACTTCAGTTCTATGTGCGATGTAGAATTTTGGAGCCAGAATACTTTGTATCACGAGGGCTTATTCTATTGA 741 0.4453 MVRAPSYDKSGQRKGTWTPEEDMKLIAYVTRYGHWNWSLLPKFAGLARSGKSCRLRWMNYLRPHIKRGDYSQEEDETIIRLHEKLGNRWSMIASHLPGRTDNEIKNHWHTTLKKRFEPKSTKVSNSKNHSPMEDKQLQRESENSGGSDTCPYSPQPSSSEFSCITGDTVADKNHENRILEDELSFLDAYIEPVSANFWTEPYMTDISYVPPTGAAVPLGCELEYFSSMCDVEFWSQNTLYHEGLFY 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00060 246 MobiDBLite consensus disorder prediction 115 159 - -
Gabi4579g00060 246 CDD SANT 16 61 IPR001005 -
Gabi4579g00060 246 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi4579g00060 246 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Gabi4579g00060 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4579g00060 246 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 159 - -
Gabi4579g00060 246 MobiDBLite consensus disorder prediction 142 159 - -
Gabi4579g00060 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4579g00060 246 CDD SANT 70 112 IPR001005 -
Gabi4579g00060 246 SMART sant 13 63 IPR001005 -
Gabi4579g00060 246 SMART sant 66 114 IPR001005 -
Gabi4579g00060 246 FunFam MYB-related transcription factor 13 66 - -
Gabi4579g00060 246 Gene3D - 69 144 - -
Gabi4579g00060 246 Gene3D - 14 66 - -
Gabi4579g00060 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4579g00060 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4579g00060 246 MobiDBLite consensus disorder prediction 115 141 - -
Gabi4579g00060 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00060 Gabi-Chr4579 876280 878214 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00060 1 135 MYB Transcription Factor Family AT2G31180 60.714 9.60e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4579g00060 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00060 K09422 - gmx:100778518 270.011