Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00058 ATGGTGAGAACACCTTCCTGTGAAAAAAGTGAACTGAAGAAAGGAACTTGGACTCCAGAGGAAGACAGGAAGTTAATGGCTTATATCACTAGGTATGGTTGCTGGAATTGGAGGCAACTCCCAAGGTTTGCAGGTCTGGCTAGGTGTGGAAAGAGTTGCAGGCTGAGGTGGATGAATTATCTCAGACCCAACATCAAAAGAGGGAACTACACTCGAGAAGAAGAAGATACTATTATCAGACTGCACGAGAAGTTGGGTAACAGGTGGTCGATTATAGCCTCTCATTTACCAGGAAGAACAGATAATGAGATAAAGAACCACTGGCACACAAACCTCAAGAAGCGCTTTCGAAAGAACGAAGTAACACTAACGAAATCAATTGATTCTGGGTCCAATCAAGACAGGGACACGTTTCAAAACGATGATTCCGTAACCTCAGATCATACCACTGCTACCACAAACGAAAATTTGTTAAAGGATCAAGATGACTTCGATTTTGTGGATGCGTACACAGAGACCGTGAACGAAAATATCTGGACAGAGACGTATATGGATGACATTTCCTATGCCCCAATTGAGATAATGCAAAACATTGTTAATGGTAGTTCTCAAGGTTCAGACACTACAGAGACCCTGAATGCTTGTGCTTTGTCTCCACAGTCATTTTCTAGCGAAAGTTTAGTTAAGGAGAATGACCACTTTGCCTTTCTAGAAGCAACACAACCAACGTCTGAAAATTTTTGGACAGAGCCTTATGTGGTTGACTTGTCTCATGTTCCAAACGAACTACTTGCACCGTTGGCGACAGAGTCTGATGATTATTTTTCTCCATTGTACGATGCAGATCTTTGGAATCAAAGTAATTTGCATGATTCACAAAATAGCTTTTTCCAATGA 897 0.4147 MVRTPSCEKSELKKGTWTPEEDRKLMAYITRYGCWNWRQLPRFAGLARCGKSCRLRWMNYLRPNIKRGNYTREEEDTIIRLHEKLGNRWSIIASHLPGRTDNEIKNHWHTNLKKRFRKNEVTLTKSIDSGSNQDRDTFQNDDSVTSDHTTATTNENLLKDQDDFDFVDAYTETVNENIWTETYMDDISYAPIEIMQNIVNGSSQGSDTTETLNACALSPQSFSSESLVKENDHFAFLEATQPTSENFWTEPYVVDLSHVPNELLAPLATESDDYFSPLYDADLWNQSNLHDSQNSFFQ 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00058 298 CDD SANT 69 112 IPR001005 -
Gabi4579g00058 298 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Gabi4579g00058 298 CDD SANT 16 61 IPR001005 -
Gabi4579g00058 298 Gene3D - 6 67 - -
Gabi4579g00058 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi4579g00058 298 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi4579g00058 298 FunFam MYB-related transcription factor 13 66 - -
Gabi4579g00058 298 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi4579g00058 298 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi4579g00058 298 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi4579g00058 298 Gene3D - 69 142 - -
Gabi4579g00058 298 SMART sant 13 63 IPR001005 -
Gabi4579g00058 298 SMART sant 66 114 IPR001005 -
Gabi4579g00058 298 MobiDBLite consensus disorder prediction 123 154 - -
Gabi4579g00058 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi4579g00058 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00058 Gabi-Chr4579 814664 815978 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00058 1 182 MYB Transcription Factor Family AT2G31180 49.468 5.17e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi4579g00058 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00058 K09422 - gmx:100811124 345.895