Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00056 ATGGAGTTTGACCTTGAAAACCCTCTAGAAAACTTCCACAATCTTCCCTGTGACTCTGTCTCTTCTCTCTTCGTCATTGAATCTGACCACATCCCACCACCGAATTACTTTCAGTGTCTGAAAGCTAGCAACTTCGACATATCTGTTAGAAGGGATGTCATCTCTTTGATCTCACAGTTGTCTTGCACCTTCGATCCTGTTCTCCCTTACCTAGCTGTCAATTATCTGGATCGCTTCCTAGCTAACCAAGGGATATTGCAACCAAAGCCATGGGCCAACAAGCTCCTTGCAATGTCTTGCTTTTCTTTAGCTGCCAAGATGTTGAAAACAGAGTACTCTGCCACTGATGTTCAGGCTCTTCTGAATCATGGTGATGGCGGCGTCATTTTTGAGATGCAAACAATACAAAGAATGGAAGCCCTTGTCTTGGGGGCTTTGAATTGGCGAATGCGTTCCATCACCCCTTTCTCTTTCATGCCTTTCTTCAGCAATTTGTTCAGGCTCGAAGATCCAGCATTGAGGCAGGTTTTGAAAGATCGAGCATCTGAAATTATATTGAAGTCACAAAGAGAGATAAAGGTTTTGGAATTCAAGCCATCTATAATTGCTGCATCAGCCCTTCTTTATGCTTCACATGAGTTGTTTCCCTTTCAATATCCGTGCTTCTTAACAGCAATATCCGATTGTTCATATGTAAATAAAGAAAATGTGATGCAATGCTATAATGCCATACAAGACATAGCCAGGGATGAGTACGAATCAGTGTTCAATGTAAATTCAAGTTCAGACACACCGGTTAATGTGTTAGACGAACATTTTCTGAGCTTGGAAAGTGAAAAAACCAACGGAACCAACGTTGCTTCCACTACTCTCATAAAAGAGAAGGGTCTCAAGAGAAGGAAAATCACAAATTATGGTAACAATCGCATGGTCCAGTTTTCAGATTTTCATCAATGCTGA 960 0.4146 MEFDLENPLENFHNLPCDSVSSLFVIESDHIPPPNYFQCLKASNFDISVRRDVISLISQLSCTFDPVLPYLAVNYLDRFLANQGILQPKPWANKLLAMSCFSLAAKMLKTEYSATDVQALLNHGDGGVIFEMQTIQRMEALVLGALNWRMRSITPFSFMPFFSNLFRLEDPALRQVLKDRASEIILKSQREIKVLEFKPSIIAASALLYASHELFPFQYPCFLTAISDCSYVNKENVMQCYNAIQDIARDEYESVFNVNSSSDTPVNVLDEHFLSLESEKTNGTNVASTTLIKEKGLKRRKITNYGNNRMVQFSDFHQC 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00056 319 CDD CYCLIN_AtCycD-like_rpt2 153 244 - -
Gabi4579g00056 319 FunFam D6-type cyclin 149 242 - -
Gabi4579g00056 319 Pfam Cyclin, N-terminal domain 25 150 IPR006671 -
Gabi4579g00056 319 Gene3D - 22 243 - -
Gabi4579g00056 319 PANTHER CYCLINS 26 254 IPR039361 -
Gabi4579g00056 319 Pfam Cyclin, C-terminal domain 153 261 IPR004367 -
Gabi4579g00056 319 Gene3D - 33 151 - -
Gabi4579g00056 319 SMART Cyclin_C_2 153 268 IPR004367 -
Gabi4579g00056 319 FunFam D6-type cyclin 33 148 - -
Gabi4579g00056 319 SUPERFAMILY Cyclin-like 16 150 IPR036915 -
Gabi4579g00056 319 SMART cyclin_7 157 246 IPR013763 -
Gabi4579g00056 319 SMART cyclin_7 51 144 IPR013763 -
Gabi4579g00056 319 SUPERFAMILY Cyclin-like 135 249 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00056 Gabi-Chr4579 770697 772677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00056 1 304 Core Cell Cycle Gene Families AT4G03270 46.541 1.67e-80 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00056 K18812 - gmx:100799951 550.821