Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00036 ATGAAGATTACTTCCTTCTTCACCAAGGCTTTCCACAGCTTCCCTTCATGCTCCAAGCTTGTGCTTCTATGCGCTCTCAGTGGTGGAGGTGTGGTGTCATACTCAGAATTACAATCAGATACTGAACCTCCTAGTATTGATCCTTATGAGCCCAAGAAAAAGAAAATGGTGGTTCTTGGAACAGGATGGGCTGGTATCAGTTTTCTAAAGGATCTGGATGCTTCCCTATATGATGTTCAGGTTGTTTCTCCTCGTAACTACTTTGCATTCACTCCCTTATTACCCAGTGTCACTTGTGGGACTGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATAAAAAAGAGAAAAGGAGAAATTAAATTTTGGGAGGCAGAATGCCTGAAGATTGATTATGCAAACAAAAAGGTTTTATGTAGGTCCAATATTGACAACAACTTAGTGGGAAGTGGCGAATTTTCTTTGGACTATGACTTCTTGGTTGTAGCAATTGGAGCACAAGTAAATACTTTTAACACCCCTGGTGTCACGGAGAATTGTCATTTTCTGAAGGAGGTAGAGGATGCTCAGAAGATCAGAATGTCTGTGATAGATTGCTTTGAGAAAGCTGTTCTTCCATCTCTATCTGAAGAAGAACGACGGACCAACCTGCATTTTATAGTTGTGGGAGGAGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGACTATGTCCAAGAAGATTTAGTCAAATTGTACCCATCTGTCAAAGATATGGTGAAGATAACAGTGATTCAATCGGGAGATCACATCTTGAACACATTTGATGAAAGAATTAGTTCATTTGCCGAGCAAAAGTTTGGAAGAGATGGTATAGAAGTTCAAACAGGATGTCGAGTTGTCAATGTTAGTGACAAGGAAATCACAGTAAAGGTGAAATCAACGGGAGAGTTTTGCTCTGTACCCCATGGATTGGTTGTCTGGTCCACTGGAATTGCAACTCGTCCAGTTGTGAGGGACTTCATGGAACAAATCGGTCAGGCTAAAAGGCATGTCCTAGCAACAGATGAATGGTTGCGAGTGAAGGGATGTAAATCTGTGTATGCTATTGGTGATTGTTCTTCAATAAATCAACGTAAAATCATGGATGATATCTCGGCCATTTTTGAAGCTGCAGACAAAGACAACTCTGGTACCTTAACTGTTGAAGAATTCGAGGATGTGATGGATGACATCATCTTAACATATCCACAAGTCGAACTCTATATAAAGAGCCAACATCTGCTTGATTTGACAGTTCTGTGGAAAGATTCCCAAGGAAATGATAGAAAAGAAATAGACATAGAAGGGCTTAAGCTGGCCCTTTGTCAAGTGGATTCACAGATGAAGAGTCTTCCAGCAACTGCACAGGTTGCTTCCCAACAGGGTGCATATCTGGCTAGATGCTTTAATCGCATGGATCAATGTGCAGAGCATCCTGAAGGTCCTCAACGATTTGGAGGATCTGGACATCATAAGTTTCGTCCTTTCCGGTATAAGCATTTTGGGCAATTTGCTCCCCTGGGTGGGGAGCAGGCAGCCGCAGAACTTCCTGGAGACTGGGTTTCTATGGGTCAGAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGGTGTTGGTCATATCAGATTGGACAAGAAGATTCATATTTGGGAGAGATTCTAGTCGTATTTAA 1728 0.4248 MKITSFFTKAFHSFPSCSKLVLLCALSGGGVVSYSELQSDTEPPSIDPYEPKKKKMVVLGTGWAGISFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKIDYANKKVLCRSNIDNNLVGSGEFSLDYDFLVVAIGAQVNTFNTPGVTENCHFLKEVEDAQKIRMSVIDCFEKAVLPSLSEEERRTNLHFIVVGGGPTGVEFAAELHDYVQEDLVKLYPSVKDMVKITVIQSGDHILNTFDERISSFAEQKFGRDGIEVQTGCRVVNVSDKEITVKVKSTGEFCSVPHGLVVWSTGIATRPVVRDFMEQIGQAKRHVLATDEWLRVKGCKSVYAIGDCSSINQRKIMDDISAIFEAADKDNSGTLTVEEFEDVMDDIILTYPQVELYIKSQHLLDLTVLWKDSQGNDRKEIDIEGLKLALCQVDSQMKSLPATAQVASQQGAYLARCFNRMDQCAEHPEGPQRFGGSGHHKFRPFRYKHFGQFAPLGGEQAAAELPGDWVSMGQSTQWLWYSVYASKQVSWRTRVLVISDWTRRFIFGRDSSRI 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00036 575 SUPERFAMILY FAD/NAD(P)-binding domain 218 373 IPR036188 -
Gabi4579g00036 575 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Gabi4579g00036 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Gabi4579g00036 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Gabi4579g00036 575 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Gabi4579g00036 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 574 - -
Gabi4579g00036 575 Gene3D - 44 393 - -
Gabi4579g00036 575 Gene3D - 437 574 - -
Gabi4579g00036 575 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 46 405 - -
Gabi4579g00036 575 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Gabi4579g00036 575 PANTHER NADH DEHYDROGENASE 50 575 IPR045024 GO:0003954|GO:0006116
Gabi4579g00036 575 SUPERFAMILY EF-hand 334 461 IPR011992 -
Gabi4579g00036 575 SMART efh_1 380 408 IPR002048 GO:0005509
Gabi4579g00036 575 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 378 IPR023753 GO:0016491
Gabi4579g00036 575 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00036 Gabi-Chr4579 532005 538040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00036 7 575 Chloroplast and Mitochondria Gene Families AT4G21490 64.747 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00036 K03885 - gmx:100793566 965.296