Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00021 ATGTCTCTTAATGACAATCTTTTAACTGGAGAAATACCAGATGCTTTTCAGTCTCTTGTGCTATTGACCAATCTAGATTTATCAAATAATAATTTAAGTGGGGAATTGCCTCCGTCTCTGGGGAATTTGTCAGCACTGACCTCCTTAGATTTACAGAACAATAAACTGTCTGGGACCCTTGATGTTTTAGAAGGCCTTCTACTGCAAAATTTGAATATCGAGAACAACCAGTTTTCTGGACCAATACCTCAAAAGATGTTAAGCATCCCTTTCTTCAGAAAAAGTGGAAACCCTTTTGATATTATTGGCAATGCTACTGTAGCTCCAGCTCATCCACCTCGCTCTCCAGTGACAGCTCCCCCATCAGGAATTATAGTTTCTGGGTCGCCATCTTCTGGACGCATACCTACTAAACAGGCTGCTGGACCAACTGCAGTAAAGCAATCAAATTCTGGGAAATCGAAGAATAACACCAAAAGGGTGGTTTGGATATCTATTGCTGGTGTATTGTTGCTTATTATTTTGTTACTGGGACTAGTTCTCTTTATTCCAAAATGTAGCAGAAGGGAACGGGTTGACAGAATTCCCATGCAACATCAAAATGGTGCATATGGAGGTGAAAGACCTAATCCCAGGGATTACGGGGCTTTAGTCCAACCACCGAGTCAAACTGAGAAAGTACCAAAAGTAGCTGTGGTGAGATCAAAAGAGGATCATCAAGCAGAGACAAGGAAAGTGAGGGCTATTCCAAAGCCACAAGATGAGCAAGAGAAGGATATGCAAAGAATGGGAACAATACCAAATCAGTTAGATCATGCAATAGATATGAATGCACTAGGTGTATATTCAATGCCACCTCCACCTCCACCTCCACCTCCTCCACCACTTCCTGCTGAGACGGTGATTGTTGAGCCAAGCACATTCCGCAGAGGGGCTGACATCAATCCTTCCAAAAAAAGTCCAGTGCTTCCCACTTTTGCTAAATCTTTCACCGTTGCATTCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGATTAGGCATGCTGGGGAGTGTATATAGGGCAGAGCTTCCAGATGGGAAGAAACTTGCTGTCAAGAAACTAGACAAGAGAGTCTCAGATCAGCAAAAGGATGATGAATTTCTTGAATTGGTGAACAGTATTGACGGAATCCGGCATGCAAATATTGTTGAGCTTGTTGGATACTGTTTAGAGCACGGTCAAAGGCTTCTGATCTACGAGTACTGCAGTAATGGGTCACTGAAGGATGCCCTCCATTCAAATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGCATTAGGATGGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCCGCTAACATTCTCCTTGATGATGATCTATCCGTGCGTGTATCTGAATGTGGTTTGGCTCCATTGATAACCAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTACTAACAGCTTATGGCTATGGGGCTCCAGAATTTGAGTCAGGAATTTACACTTACCAGAGTGATGTGTACAGCTTTGGAGTTGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTATGACAGGACGCGCCCTCGAGGGGAGCAGTTTCTGGTGAGATGGGCAATTCATCAACTTCATGACATTGATGCATTATCAAGGATGGTTGATCCTTCTCTAAAGGGACATTACCCTGCCAAATCATTGTCAAATTTTGCAGATATTATTTCTAGATGTATTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACTTATTAAATATGATAAGGAAGGAATCTCAGCAAAATGAATCAAATGAAAATTGA 1899 0.4234 MSLNDNLLTGEIPDAFQSLVLLTNLDLSNNNLSGELPPSLGNLSALTSLDLQNNKLSGTLDVLEGLLLQNLNIENNQFSGPIPQKMLSIPFFRKSGNPFDIIGNATVAPAHPPRSPVTAPPSGIIVSGSPSSGRIPTKQAAGPTAVKQSNSGKSKNNTKRVVWISIAGVLLLIILLLGLVLFIPKCSRRERVDRIPMQHQNGAYGGERPNPRDYGALVQPPSQTEKVPKVAVVRSKEDHQAETRKVRAIPKPQDEQEKDMQRMGTIPNQLDHAIDMNALGVYSMPPPPPPPPPPPLPAETVIVEPSTFRRGADINPSKKSPVLPTFAKSFTVAFLQQYTNSFSQDNLIGLGMLGSVYRAELPDGKKLAVKKLDKRVSDQQKDDEFLELVNSIDGIRHANIVELVGYCLEHGQRLLIYEYCSNGSLKDALHSNDEFKTRLSWNARIRMALGAARALEYLHEQCQPPVVHRNFKSANILLDDDLSVRVSECGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRTRPRGEQFLVRWAIHQLHDIDALSRMVDPSLKGHYPAKSLSNFADIISRCIQSEPEFRPAMSEVVLYLLNMIRKESQQNESNEN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00021 632 Gene3D Ribonuclease Inhibitor 1 136 IPR032675 -
Gabi4579g00021 632 MobiDBLite consensus disorder prediction 218 244 - -
Gabi4579g00021 632 ProSiteProfiles Leucine-rich repeat profile. 45 67 IPR001611 GO:0005515
Gabi4579g00021 632 MobiDBLite consensus disorder prediction 230 244 - -
Gabi4579g00021 632 SUPERFAMILY Protein kinase-like (PK-like) 319 616 IPR011009 -
Gabi4579g00021 632 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 630 - -
Gabi4579g00021 632 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 309 419 - -
Gabi4579g00021 632 SUPERFAMILY L domain-like 2 89 - -
Gabi4579g00021 632 Gene3D Phosphorylase Kinase; domain 1 309 419 - -
Gabi4579g00021 632 Gene3D Transferase(Phosphotransferase) domain 1 420 632 - -
Gabi4579g00021 632 PANTHER LEUCINE RICH REPEAT KINASE 2 2 621 - -
Gabi4579g00021 632 Pfam Protein tyrosine and serine/threonine kinase 345 614 IPR001245 GO:0004672|GO:0006468
Gabi4579g00021 632 ProSiteProfiles Protein kinase domain profile. 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4579g00021 632 SUPERFAMILY Formin homology 2 domain (FH2 domain) 285 301 - -
Gabi4579g00021 632 MobiDBLite consensus disorder prediction 130 154 - -
Gabi4579g00021 632 PRINTS Leucine-rich repeat signature 43 56 - -
Gabi4579g00021 632 PRINTS Leucine-rich repeat signature 22 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00021 Gabi-Chr4579 381611 390538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00021 1 623 Strubbelig Receptor Gene Family AT4G03390 60.506 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi4579g00021 PK_Tyr_Ser-Thr 3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00021 - - gmx:100811490 985.711