Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00019 ATGGGTGAGGAGAGATCTGATTCACTGTACAAGAGAGTGAAGATCCATGGACAAATTTTATTGGGATTTATGTTTATCTGCATAGTCCAGTTTTCACTTGCAGACACTAATCCCATTGATGTTGCTGCAATTAATAGATTATATACTGCTTTGGGCAACCCTGTTCTTCCTGGGTGGGTTTCTAGTGCGGGAGACCCCTGCGGAGAAGCATGGCAAGGCGTTCTATGTAATGGTTCACTCATACAGGAAATAGTTCTGAGTGGTGCAAATTTGGGAGGAGAACTGGGGGATAGCTTGGGAGAATTTGTTTCTATCAGAAAAATAATTTTGAGCAACAACCACATTGGGGGAATTATTCCATCCAGTTTGCCAGTCACCTTGCAAAACTTTTTTCTTTCTGATAATCAAATCTCTGGAAGTATTCCAACCTCTTTATCCACATTGACCGAACTGACTGCCATGTCTCTTAATGACAATCTTTTAACTGGAGAAATACCAGATGCTTTTCAGTCTCTTGTGCTATTGACCAATCTAGATTTATCAAATAATAATTTAAGTGGGGAATTGCCTCCGTCTCTGGGGAATTTGTCAGCACTGACCTCCTTAGATTTACAGAACAATAAACTGTCTGGGACCCTTGATGTTTTAGAAGGCCTTCTACTGCAAAATTTGAATATCGAGAACAACCAGTTTTCTGGACCAATACCTCAAAAGATGTTAAGCATCCCTTTCTTCAGAAAAAGTGGAAACCCTTTTGATATTATTGGCAATGCTACTGTAGCTCCAGCTCATCCACCTCGCTCTCCAGTGACAGCTCCCCCATCAGGAATTATAGTTTCTGGGTCGCCATCTTCTGGACGCATACCTACTAAACAGGCTGCTGGACCAACTGCAGTAAAGCAATCAAATTCTGGGAAATCGAAGAATAACACCAAAAGGGTGGTTTGGATATCTATTGCTGGTGTATTGTTGCTTATTATTTTGTTACTGGGACTAGTTCTCTTTATTCCAAAATGTAGCAGAAGGGAACGGGTTGACAGAATTCCCATGCAACATCAAAATGGTGCATATGGAGGTGAAAGACCTAATCCCAGGGATTACGGGGCTTTAGTCCAACCACCGAGTCAAACTGAGAAAGTACCAAAAGTAGCTGTGGTGAGATCAAAAGAGGATCATCAAGCAGAGACAAGGAAAGTGAGGGCTATTCCAAAGCCACAAGATGAGCAAGAGAAGGATATGCAAAGAATGGGAACAATACCAAATCAGTTAGATCATGCAATAGATATGAATGCACTAGGTGTATATTCAATGCCACCTCCACCTCCACCTCCACCTCCTCCACCACTTCCTGCTGAGACGGTGATTGTTGAGCCAAGCACATTCCGCAGAGGGGCTGACATCAATCCTTCCAAAAAAAGTCCAGTGCTTCCCACTTTTGCTAAATCTTTCACCGTTGCATTCCTTCAACAGTATACAAATAGCTTTTCTCAAGACAATCTTATAGGATTAGGCATGCTGGGGAGTGTATATAGGGCAGAGCTTCCAGATGGGAAGAAACTTGCTGTCAAGAAACTAGACAAGAGAGTCTCAGATCAGCAAAAGGATGATGAATTTCTTGAATTGGTGAACAGTATTGACGGAATCCGGCATGCAAATATTGTTGAGCTTGTTGGATACTGTTTAGAGCACGGTCAAAGGCTTCTGATCTACGAGTACTGCAGTAATGGGTCACTGAAGGATGCCCTCCATTCAAATGATGAATTCAAAACAAGACTGTCATGGAATGCTCGCATTAGGATGGCACTTGGGGCAGCTAGAGCCTTAGAGTACTTGCATGAGCAATGTCAGCCACCTGTTGTACACAGAAATTTCAAGTCCGCTAACATTCTCCTTGATGATGATCTATCCGTGCGTGTATCTGAATGTGGTTTGGCTCCATTGATAACCAAAGGTTCTGTAAGTCAGCTCTCAGGACAACTACTAACAGCTTATGGCTATGGGGCTCCAGAATTTGAGTCAGGAATTTACACTTACCAGAGTGATGTGTACAGCTTTGGAGTTGTTATGTTAGAACTTTTGACAGGCCGTCAGTCCTATGACAGGACGCGCCCTCGAGGGGAGCAGTTTCTGGTGAGATGGGCAATTCATCAACTTCATGACATTGATGCATTATCAAGGATGGTTGATCCTTCTCTAAAGGGACATTACCCTGCCAAATCATTGTCAAATTTTGCAGATATTATTTCTAGATGTATTCAGTCGGAGCCAGAATTTAGGCCAGCAATGTCAGAGGTTGTCTTGTACTTATTAAATATGATAAGGAAGGAATCTCAGCAAAATGAATCAAATGAAAATTGA 2358 0.4224 MGEERSDSLYKRVKIHGQILLGFMFICIVQFSLADTNPIDVAAINRLYTALGNPVLPGWVSSAGDPCGEAWQGVLCNGSLIQEIVLSGANLGGELGDSLGEFVSIRKIILSNNHIGGIIPSSLPVTLQNFFLSDNQISGSIPTSLSTLTELTAMSLNDNLLTGEIPDAFQSLVLLTNLDLSNNNLSGELPPSLGNLSALTSLDLQNNKLSGTLDVLEGLLLQNLNIENNQFSGPIPQKMLSIPFFRKSGNPFDIIGNATVAPAHPPRSPVTAPPSGIIVSGSPSSGRIPTKQAAGPTAVKQSNSGKSKNNTKRVVWISIAGVLLLIILLLGLVLFIPKCSRRERVDRIPMQHQNGAYGGERPNPRDYGALVQPPSQTEKVPKVAVVRSKEDHQAETRKVRAIPKPQDEQEKDMQRMGTIPNQLDHAIDMNALGVYSMPPPPPPPPPPPLPAETVIVEPSTFRRGADINPSKKSPVLPTFAKSFTVAFLQQYTNSFSQDNLIGLGMLGSVYRAELPDGKKLAVKKLDKRVSDQQKDDEFLELVNSIDGIRHANIVELVGYCLEHGQRLLIYEYCSNGSLKDALHSNDEFKTRLSWNARIRMALGAARALEYLHEQCQPPVVHRNFKSANILLDDDLSVRVSECGLAPLITKGSVSQLSGQLLTAYGYGAPEFESGIYTYQSDVYSFGVVMLELLTGRQSYDRTRPRGEQFLVRWAIHQLHDIDALSRMVDPSLKGHYPAKSLSNFADIISRCIQSEPEFRPAMSEVVLYLLNMIRKESQQNESNEN 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00019 785 MobiDBLite consensus disorder prediction 283 307 - -
Gabi4579g00019 785 PRINTS Leucine-rich repeat signature 196 209 - -
Gabi4579g00019 785 PRINTS Leucine-rich repeat signature 175 188 - -
Gabi4579g00019 785 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 462 572 - -
Gabi4579g00019 785 SUPERFAMILY Formin homology 2 domain (FH2 domain) 438 454 - -
Gabi4579g00019 785 Gene3D Phosphorylase Kinase; domain 1 462 572 - -
Gabi4579g00019 785 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 37 264 - -
Gabi4579g00019 785 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Gabi4579g00019 785 SUPERFAMILY Protein kinase-like (PK-like) 472 769 IPR011009 -
Gabi4579g00019 785 Pfam Leucine rich repeat 126 185 IPR001611 GO:0005515
Gabi4579g00019 785 ProSiteProfiles Protein kinase domain profile. 495 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4579g00019 785 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 573 783 - -
Gabi4579g00019 785 SUPERFAMILY L domain-like 40 239 - -
Gabi4579g00019 785 MobiDBLite consensus disorder prediction 383 397 - -
Gabi4579g00019 785 MobiDBLite consensus disorder prediction 371 397 - -
Gabi4579g00019 785 Gene3D Ribonuclease Inhibitor 40 256 IPR032675 -
Gabi4579g00019 785 Pfam Protein tyrosine and serine/threonine kinase 498 767 IPR001245 GO:0004672|GO:0006468
Gabi4579g00019 785 Gene3D Transferase(Phosphotransferase) domain 1 573 785 - -
Gabi4579g00019 785 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Gabi4579g00019 785 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 25 779 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00019 Gabi-Chr4579 380298 390538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00019 26 776 Strubbelig Receptor Gene Family AT4G03390 61.367 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Gabi4579g00019 PK_Tyr_Ser-Thr 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00019 - - gmx:100811490 1239.17