Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00016 ATGGTAGAGTGTGCGACTGAGTTCATTAGCTTCATCACTTCAGAGGCTAAAATCCGATGCCAACGCGACCTACGTATAACTCTTACCGCAGAAGATTTGTTATGTGCTATGCAGAGGTTAGGTTTCCATAATTATGCTGATCCTCTCAATCTTTACCTTCGTCGCTATCGTCTCAATGCAGCTGCACAGCATGGTAGCAACATTCCTGCACAGCCAACAATTGCAAATGATAATGTTCCACCACCACCACCACCACTGCCACCTTCTCTTACTCCTACTTTCCCAATCACTCCAAACCCACCATATCCAAATCCAATGGAAATGGGTGGGTTATTACATACAAACCCATATCAAGATCCAATGCAAATGGGTGGGATGCATACAAACCAATCTTTAGACCAAATGCAAATGAATATTGCTCCAAACCCATATCCAAACCAGATGCAAATGGGTATCGCTCCAAACCCATATCCAGATCCAAGGGAAATGGGTATTGCTTCAAACACATATCCAAACCAAATGCAAATGGGTATTGCTCCAAACCCAAGTGAAATGGGTATTGTTCCAAACTCATATTCTGACCTAATGCAAATGGGTATTGCTCCAAACCCAAGTGAAATGGATATTGTACCAAACTCATATTCTGACCTAATGCAAATGGGTATTGTAGAACCAAACTCATTTTCTGACCTAATGCAAATGGGTACTATTGCTCCAAACCCATATCCAGACCCAAGGGAAATTGGTATGACTCCAAACCCGTATCAAGACCCAGTGCAAATGGGTAACGCTCCAAACCCATATCCTGACCCAAATGAAATGGGTGGGTTACACAGAGATGATGAGTCAGAAGGCGGTGACAATGTTTACTTTGATCCTATTGCTTTCCTTAATCGTGACAAATTCTTAAGTGACTGA 918 0.4237 MVECATEFISFITSEAKIRCQRDLRITLTAEDLLCAMQRLGFHNYADPLNLYLRRYRLNAAAQHGSNIPAQPTIANDNVPPPPPPLPPSLTPTFPITPNPPYPNPMEMGGLLHTNPYQDPMQMGGMHTNQSLDQMQMNIAPNPYPNQMQMGIAPNPYPDPREMGIASNTYPNQMQMGIAPNPSEMGIVPNSYSDLMQMGIAPNPSEMDIVPNSYSDLMQMGIVEPNSFSDLMQMGTIAPNPYPDPREIGMTPNPYQDPVQMGNAPNPYPDPNEMGGLHRDDESEGGDNVYFDPIAFLNRDKFLSD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00016 305 MobiDBLite consensus disorder prediction 258 287 - -
Gabi4579g00016 305 PRINTS CCAAT-binding transcription factor subunit A signature 1 16 - -
Gabi4579g00016 305 PRINTS CCAAT-binding transcription factor subunit A signature 20 38 - -
Gabi4579g00016 305 PRINTS CCAAT-binding transcription factor subunit A signature 39 57 - -
Gabi4579g00016 305 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 37 IPR003958 -
Gabi4579g00016 305 Gene3D Histone, subunit A 1 76 IPR009072 GO:0046982
Gabi4579g00016 305 SUPERFAMILY Histone-fold 1 63 IPR009072 GO:0046982
Gabi4579g00016 305 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00016 Gabi-Chr4579 334946 335863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00016 1 80 CCAAT-HAP3 Transcription Factor Family AT3G53340 47.500 1.68e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4579g00016 CBFD_NFYB_HMF 7.4e-06 CL0012