Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00015 ATGCCCAATGTGCTAAGAATCGTGCGCCAAGCTCTTCCACCGAATGCAGAAATCAGTGATGAAACAAAGATAACAATGGTACAGTGTGCGACTAATTTCATTAGCCTCATCACTAGCGAGGCTAAAAGACGGTGCGAAAGCGAGCAACGATCATCTGTTACCGAAGAAGATTTGTTATGGGCAATGAGGAGGTTAGGTTTACATAATTATGCTGCCTTTTGCACTCTTTACTCTGCATATCGTGGCGGACCTGTTCCAGCTGCACAACCAGCTGTGATTGCAAATGATAGTGTGCCACCACCATTATCAACAGCTTCTGATGCCCCAACTGAAAAAGATGAGTCAGGAGCTGGTACCAGCTCAAGTGGTGCCAAAGTTTACCGCTTACCTTAA 393 0.4555 MPNVLRIVRQALPPNAEISDETKITMVQCATNFISLITSEAKRRCESEQRSSVTEEDLLWAMRRLGLHNYAAFCTLYSAYRGGPVPAAQPAVIANDSVPPPLSTASDAPTEKDESGAGTSSSGAKVYRLP 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00015 130 Gene3D Histone, subunit A 1 81 IPR009072 GO:0046982
Gabi4579g00015 130 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 3 62 IPR003958 -
Gabi4579g00015 130 SUPERFAMILY Histone-fold 3 77 IPR009072 GO:0046982
Gabi4579g00015 130 MobiDBLite consensus disorder prediction 91 130 - -
Gabi4579g00015 130 MobiDBLite consensus disorder prediction 99 122 - -
Gabi4579g00015 130 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 77 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00015 Gabi-Chr4579 322929 323321 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00015 3 77 CCAAT-HAP3 Transcription Factor Family AT1G21970 48.000 2.76e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4579g00015 CBFD_NFYB_HMF 7.5e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00015 K08065 - ini:109174641 92.0485