Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00014 ATGAAGGTAAATGATCACAAAACTTGGGGTGCATGTTTTTTAGGTTCAAAGCAATCGCAAGAGGAAGGAGATTCTTCTTCGAGAAATAAGCAGGTGGTTGTCGAAGGTGCAGCTCCCCGTCAAGAAAATCCAAACCTGCCAATGTCCAATGTGCTAAGAATCGTGCGCCAAGCTCTTCCACCGAATGCAAAAATCACTGATGAAACAAAGATAACAATGGTAGAGTGTGTGACTGAGTTCATTTGCTTCATCACTAGCGAGGCTAATATACGGTGCCAAAGCGAGCAACGAGCAACTGTTACTGCAGAAGATTTGTTATGGGCAATGAGGAGGTTAGGTTTACATAATTATGCTGACCTTTGCACTCTTTACCATAATCGTTATCGTCTCAGTACAACTGCATATCGTGTGCCACCACCGTTATCAACAACTTGTGATGCTCCAATGGAAGTGGGTGGGTCAGGTACAGACGACCCATATCCAGACCCAACTGAAAAAGATGAGTCAGGAGATAACAGCTCAAGCGGTGCCAATGTTTACTTTGATGCTACTGCTTACCTTAGTCCTGACAAATTCTTCGATGACTGA 588 0.4388 MKVNDHKTWGACFLGSKQSQEEGDSSSRNKQVVVEGAAPRQENPNLPMSNVLRIVRQALPPNAKITDETKITMVECVTEFICFITSEANIRCQSEQRATVTAEDLLWAMRRLGLHNYADLCTLYHNRYRLSTTAYRVPPPLSTTCDAPMEVGGSGTDDPYPDPTEKDESGDNSSSGANVYFDATAYLSPDKFFDD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00014 195 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 45 109 IPR003958 -
Gabi4579g00014 195 SUPERFAMILY Histone-fold 43 131 IPR009072 GO:0046982
Gabi4579g00014 195 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 21 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4579g00014 195 MobiDBLite consensus disorder prediction 17 32 - -
Gabi4579g00014 195 PRINTS CCAAT-binding transcription factor subunit A signature 111 129 - -
Gabi4579g00014 195 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Gabi4579g00014 195 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Gabi4579g00014 195 MobiDBLite consensus disorder prediction 141 177 - -
Gabi4579g00014 195 Gene3D Histone, subunit A 36 136 IPR009072 GO:0046982
Gabi4579g00014 195 MobiDBLite consensus disorder prediction 17 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00014 Gabi-Chr4579 316480 317067 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00014 25 163 CCAAT-HAP3 Transcription Factor Family AT1G21970 43.151 3.94e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4579g00014 CBFD_NFYB_HMF 7.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00014 K08065 - csv:116402765 119.398