Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00012 ATGATCTTAAAACTTGGGGTGCATGTGTTTTTAGGTTCAAAGCAATTGCAGGAGGAAGGGGATTCTTCTTCAAAAAACAAGCAAGTGGTGGTGGAAGGTGAAGCGCCCCATCAAGAAAATCATTACCTGCCAATGTTCAATGTGCTAAGAATCGTGCACCAAGCTCTTCCACCGAATACAAAAATCACCGATGAATTAAAGATAACAATGGTAGAGAGCGTGACTGAATTCATTAGCCTCATCACTAGCGAGGCTAATATACGGTGCCAAAGCGAGCAACGATCAACTATTACAACAGAAGATTTGTTATGGGCAATGAGGAGGTTAGGTTCTCATAATTTTGCTGAGTTTTGCACTCTTTACTATAATCGTTATCGTCTCGATGCAGCTGCATATCGTGTGCCACCACCGTTATCAACAGACCCATATCCAAACCCAACTAAAAAAGATGAGTCAGGAGCTAGTAGCAGCTCAAGCGGTGCCAATGTTTACTTTGAGTCTACTGCTTACCTTAATCCTGACAAATTCTTCGATGACTGA 540 0.4204 MILKLGVHVFLGSKQLQEEGDSSSKNKQVVVEGEAPHQENHYLPMFNVLRIVHQALPPNTKITDELKITMVESVTEFISLITSEANIRCQSEQRSTITTEDLLWAMRRLGSHNFAEFCTLYYNRYRLDAAAYRVPPPLSTDPYPNPTKKDESGASSSSSGANVYFESTAYLNPDKFFDD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00012 179 Gene3D Histone, subunit A 31 160 IPR009072 GO:0046982
Gabi4579g00012 179 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Gabi4579g00012 179 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Gabi4579g00012 179 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Gabi4579g00012 179 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 139 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4579g00012 179 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 106 IPR003958 -
Gabi4579g00012 179 MobiDBLite consensus disorder prediction 138 160 - -
Gabi4579g00012 179 SUPERFAMILY Histone-fold 39 127 IPR009072 GO:0046982
Gabi4579g00012 179 MobiDBLite consensus disorder prediction 145 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00012 Gabi-Chr4579 269876 270415 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00012 22 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 43.902 2.50e-31 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4579g00012 CBFD_NFYB_HMF 2.3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00012 K08065 - ath:AT1G21970 107.071