Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00007 ATGGCGGACTCGGACAACGACTCAGGAGGGACACACAACGCAGGGAACAATGCGAACAGCAACGAGTTATCGCCTCGGGAGCAAGACAGGTTCTTACCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCTTTGCCGGCGAACGCGAAGATCTCGAAGGACGCCAAGGAGACGGTGCAGGAATGCGTGTCGGAGTTCATAAGCTTCATCACCGGCGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGCAAGACCATCAATGGCGACGACTTGCTCTGGGCCATGACCACCTTGGGCTTCGAGGAGTACGTGGATCCACTCAAGATATACCTTCAGCGATTCAGGGAGATGGAAGGGGAGAAGACCGTCGCCGCGCGTGATAAGGAGGTCGGCGGTGCTTCTTCCGCCGCCGTTAACAGTGGGTACGAGTATGGAGGTGGAGGTTCAATGGGGATGATGGTGCATCAGGGACACGTGTACGGTTCCGGTGGGTTTCATCAAGTGGCTGTCACTGGTAATAGTGCTGGTCCTGTTATGGGTAAGGGTGGGCCCAGTTATCCTGGTGCTGGATCTAATGCAGGTAGACCCAGATAG 594 0.5606 MADSDNDSGGTHNAGNNANSNELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDPLKIYLQRFREMEGEKTVAARDKEVGGASSAAVNSGYEYGGGGSMGMMVHQGHVYGSGGFHQVAVTGNSAGPVMGKGGPSYPGAGSNAGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00007 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Gabi4579g00007 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Gabi4579g00007 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Gabi4579g00007 197 MobiDBLite consensus disorder prediction 1 26 - -
Gabi4579g00007 197 Gene3D Histone, subunit A 18 140 IPR009072 GO:0046982
Gabi4579g00007 197 MobiDBLite consensus disorder prediction 176 197 - -
Gabi4579g00007 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gabi4579g00007 197 SUPERFAMILY Histone-fold 28 127 IPR009072 GO:0046982
Gabi4579g00007 197 MobiDBLite consensus disorder prediction 1 29 - -
Gabi4579g00007 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gabi4579g00007 197 FunFam Nuclear transcription factor Y subunit B-3 20 142 - -
Gabi4579g00007 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00007 Gabi-Chr4579 244366 245591 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00007 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 85.600 5.35e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi4579g00007 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00007 K08065 - qsa:O6P43_013552 313.923