Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4579g00002 ATGTCGGGTCGAGGCGGAAGGGACAGGTTTAGGAAGGATTACACTTCAAGATATGAAGATAATAAAGGGAATGGGGTTACCGGGCGTGGCAACGGCAACAGCAACAACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAACATTTTGGAGGATGAACTTGCTCATCATTTCTTAAGGTTTGGACCACTGGAGAATGTCGCGTTCCAGCCCGGCCGCAGCTATGCTTTCCTTAACTTTAAAAGGGATGAAGATGCCATTGATGCCATGAGATCACTTCAAGGTTTTCCCCTCGCAGGCAACCCCCTTAGAATCGAGTTTGCAAAGGCGGATAAATCATCAACAGTATCACGTGATGAAGATTACTCATGGGATGAACGAAGCTCAGCGTTAAGGGGGTCTCCTTTCTCTCAAAGAGAGTTTAGAGGACGCCATGGTAGCCCTGAACCGCATTATTCTGACAAATCCAAGCTGAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCTGTTGAAGGTGGATGAATCAATTTTACGAAAGGCTTTTTCTCCATTTGGTGAGATTGTGAAGATTACAACATTTCCAGGTCGTAGTTATGCCTTTGTTCGCTTTAGGAGTCTGATGTCAGCATACAGAGCAAGAGATACTCTGAAGGGAAAATTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAGCAGGTTCATCAAGCAGTGGGAGGAGCTCACTTAATGCCCCTCGCTCCCCACTTTACAAGTCAAGTGGTCGTAATGGCTCTTCTGAGCACCTAAGGCAGGATAGGAGCTACAGTGGAGATCAGAACATTAGTTCTCCAAACTCTTTCCTGAATTGGGATTCTGGAGATTCTGATGCTTATGATTTTAACAAAAGGGGTTCTTCATGGGCTGGTGGAGCTAACCCATACGAGCACAGAATTGGAGAGAAGGGGACTCCTCTAGGAGTATATCAAGAAATCCATGAACATATAAGTAGTCCATCAAGAGAAAGACATGTTCATCTTGGTGATTTTTCACAGAGATATCCTCAAAAGGGTGTGTTCTTTGAAGATCCACTGGCCTTGTCAGAAGATGTTCCCTATCTACGTGAGGCTAAAAAGCTTAAGACTGGTTCTTCTCCTGAGAGCGAGCTTCCAGAGTATCCTTTTTCCGAGTTAGAAAGACAGAAACATGTTTTCCCAAGGTTCTCTGATTTTCCGCAACATGAGTCTTTCGATAAAAACTTTGATTCTGGAAATTTCGCTTGTGGACAGACTTTTGATCGCCCACCAAATTCACCTATGGCTAGATTCGATAGACATGACTGGAAGCCTTATGACAGTTTCCAAATGGGTCCTGGTGATCCTCTGAAATCAAATTTTGTTGAGAAGAAAAGATTCACACCTGAACCTGATAATTCATCTGTAACTGAGTGGAAATGGGAAGGAACCATTGCAAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATCTTGTTACCTGAATTCCTGGATTGTACTGCAAGAACTGGTCTAGATATGCTTTCGAAGCATTACTACCAAGCAGTTGGCGTTTGGGTTGTTTTCTTTGTTCCTGGAAGTGATGCAGACATTGAATTCTACAATGAATTTATGCATTATCTGGAGGAAAAGCAGCGGGCTGCGGTTGCCAAGTTGGATGACAAAACCACCTTATTTCTTGTACCTCCATCAGATTTCTCAGAGAAAGTGCTGAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTGAGGTTGGAGAATCCTGGTTTAAATCATGGTCCCATACACATTCAAAGAGAAATGAAAAACGAAAACCTGTTGCCTTATAGTGAGAATATATCGTATTCAAAGCCATCATATTCATCTGTACGTATACCTACTTCCCCATCTATTTCAGAAATGGGTAATTCTGGAATCAGCAATCTTTCGTTACTGCGAAATAAATATGCAGCAGCTCCATCAGTTTCGGATTCAGCTCGTACTGTGGTTAGCATGTCTGAGTCTCATGATGAAAGAAGTCGTGACTATCCTCCTATCCAGCAGCGGACATCTGGACCAAACTGGTCTTCTCACAATCTGCAGAACTTAATCTCTAATAGAGCTTTACCGTTGCAACTATCAAGTAGTGCTGTTGAACCTATTGCTGAGGAGCGTCAGTCCATCATTCCAAGGACAGTGTCAGATGTGAACTCAATCCTACATTCGAGTGGAATGTCTGGTATTCCATTTTGTGGCAACAGCAAGTCATCTCATCCGGAAGTAAGACCTTTAAATCCTTTATCAGTGCCTGTGGGAGCGTTGCAACCAGAACAGCTTGCACAATTAGCTGCATCCCTTCTTGAGCAGCAGAGGCAATCGGGAAGCTCTTTAAGTGCATCTGCATCAGGTGATCCCAGGCAGATTAACAGATTTAATGGGTCGGACACCTCATCCAGACCATCCCAGAAATACAATATAGAAAACAACCTGGTGAATTCTGAACTCTCAACATCTCAGTTTGGTCAAGTTCTACAGTTGCAGAAGCAACAACAGATGTCAAATGTGCCTCAACTGTCACAGATTGTTCAAAGAGAACCACAAAGAGAGGTTAATGGAAATCAGCAATTGACAGATAGTAGCTTGCAGGAAGATGCAGAAGCAGATCCACAGAAACGTCTACAGGCAACATTACAGCTGGCTGCTGTTCTTCTTCAACAAATCCAGCAAGGAAAAGGAAGTTGA 2796 0.4371 MSGRGGRDRFRKDYTSRYEDNKGNGVTGRGNGNSNNPPSRHLWVGNLSHNILEDELAHHFLRFGPLENVAFQPGRSYAFLNFKRDEDAIDAMRSLQGFPLAGNPLRIEFAKADKSSTVSRDEDYSWDERSSALRGSPFSQREFRGRHGSPEPHYSDKSKLSDKNPEPSEVLWIGFPALLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLMSAYRARDTLKGKLFGNPRVHICFAKSEAGSSSSGRSSLNAPRSPLYKSSGRNGSSEHLRQDRSYSGDQNISSPNSFLNWDSGDSDAYDFNKRGSSWAGGANPYEHRIGEKGTPLGVYQEIHEHISSPSRERHVHLGDFSQRYPQKGVFFEDPLALSEDVPYLREAKKLKTGSSPESELPEYPFSELERQKHVFPRFSDFPQHESFDKNFDSGNFACGQTFDRPPNSPMARFDRHDWKPYDSFQMGPGDPLKSNFVEKKRFTPEPDNSSVTEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPEFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLENPGLNHGPIHIQREMKNENLLPYSENISYSKPSYSSVRIPTSPSISEMGNSGISNLSLLRNKYAAAPSVSDSARTVVSMSESHDERSRDYPPIQQRTSGPNWSSHNLQNLISNRALPLQLSSSAVEPIAEERQSIIPRTVSDVNSILHSSGMSGIPFCGNSKSSHPEVRPLNPLSVPVGALQPEQLAQLAASLLEQQRQSGSSLSASASGDPRQINRFNGSDTSSRPSQKYNIENNLVNSELSTSQFGQVLQLQKQQQMSNVPQLSQIVQREPQREVNGNQQLTDSSLQEDAEADPQKRLQATLQLAAVLLQQIQQGKGS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4579g00002 931 FunFam RNA recognition motif (RRM)-containing protein 155 248 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 809 840 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 1 39 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 685 713 - -
Gabi4579g00002 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 242 IPR000504 GO:0003723
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 140 163 - -
Gabi4579g00002 931 FunFam RNA recognition motif (RRM)-containing protein 22 134 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 1 19 - -
Gabi4579g00002 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 234 IPR000504 GO:0003723
Gabi4579g00002 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 105 IPR000504 GO:0003723
Gabi4579g00002 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Gabi4579g00002 931 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 875 901 - -
Gabi4579g00002 931 SUPERFAMILY RNA-binding domain, RBD 180 270 IPR035979 GO:0003676
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 244 269 - -
Gabi4579g00002 931 CDD RRM_SF 180 237 - -
Gabi4579g00002 931 Gene3D - 27 130 IPR012677 -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 131 163 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 875 908 - -
Gabi4579g00002 931 CDD SPOC_FPA-like 489 608 - -
Gabi4579g00002 931 SMART rrm1_1 170 238 IPR000504 GO:0003723
Gabi4579g00002 931 SMART rrm1_1 41 108 IPR000504 GO:0003723
Gabi4579g00002 931 CDD RRM_SF 42 108 - -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 20 39 - -
Gabi4579g00002 931 PANTHER RNA RECOGNITION MOTIF-CONTAINING 30 925 - -
Gabi4579g00002 931 Pfam SPOC domain 484 598 IPR012921 -
Gabi4579g00002 931 Gene3D - 151 249 IPR012677 -
Gabi4579g00002 931 MobiDBLite consensus disorder prediction 244 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4579g00002 Gabi-Chr4579 73113 93742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4579g00002 33 241 Eukaryotic Initiation Factors Gene Family AT1G22760 26.484 8.46e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4579g00002 - - gmx:100811668 1345.87