Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4578g00006 ATGGAAGAGAGGATCGGATATGGATTCGGATCCATATCCATGGATCCATTCGGGTTACTGGATATATTGGAAATTTATTTTCCTCAGCAACTGTTCACTGTGGAAGAAACCTGGCTCAATCTCACATCTTCTCTTCTTTCCTTCTTTTCTTCTCAACCGGGCCAGGGCCAGAACCTCGCTTCTCAGGTGAAAAATGATTATGGAAACTATGTCTTGTCGCTTGACTTGCATCAGTTAAAACAAATATGTCATGTTGAGGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCAGTTCACAAGGTTTTGCTTTCAATATGGGAGAATGATATGCTGGAGCTTAGTGGAAAAGTGTTTATCCGTCTTCATAACTGCCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCAGTGCGTGGAACTGCTGTGAAAGTCAGCACTGTCAGACCTCTTGTGGTAGAAATGAGTTTTGAATGTGGTAAGTGTAAACAAAGAATCACGCGTATGTTTCCTGATGGGAAATTTTCACCGCCATCAACTTGTAATTTGAATGGATGCAAGAGCAAAATCTTTAACCCATTGCGACCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGGCGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTTGTTGATGCATGCATACCCGGGGATGTGGTGACTGTTACTGGAATCATAAGAGGAATTAATACTTACATGGATATTGGAGGAGGGAAGTCGAAGAACAGAAACCAAGGATTTTACTATTTGTATCTTGAAACTGTATCCATAAAAAATTCAAAGTCGCAGTCCATACCTGAGGATTTGCAAGACTCTAATCCCAAAGCTAGACCGACTGAGCTATTTGATTTATTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCGGAAGAGCACGGTCCAGATTTGTTTCGGCAAATCCTTCAATCTATATGCCCGTCAATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTGGCATTATTTGGTGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATTGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATCTATGTCTGTGGTAATGCGACAACCAGAGCTGGCCTCACAGTAGCCGTAGTGAAGGATCCTATGACAAGCGACTATGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGCATTGATGAATTTGATAAAATGTCATCAGAGCATCAGGCTTTGCTGGAGGCAATGGAGCAACAGTGTGTCTCTATTGCTAAGGCAGGGTTAGTAGCAAGTTTATCATCTCGGACTTCTGTCTTAGCGGCTGCAAACCCCGTTGGTGGTCATTATAACCGGGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTCTTGTCTCGGTTTGATTTAATTTTCATACTGCTGGATAAACCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATTATGTCACTTCATGCTGGGCAGCATTCACCGGCATTGAAAAAGCGACGTGGAGTTGCTGCATCACAGAATGCTGATGGTGTAGGTTTGGGCGTTAGATCTGGTTCTTTAATTTCAAGGTTGAGACTTGACCCACACAGGGACAGTGATTTTGTTCCATTACCCGTTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGTCCAAGCCAGCAGCAGAAATCTTACAGAAGTTTTACCTAAAACTGAGAGATCATAATACTTCGGCTGATGGTACTCCAATAACAGCAAGGCAACTGGAAAGTCTACTAAGGCTAGCTGAAGCTCGAGCTAGGCTGGACTTAAGAGTAGAAATAACGGCCCAGGATGCAATGGATGTTGTTGAAATCATGAAGGAGTCCCTGTATGATAAATATGTGGATGAGCATGGAGTCGTGGATTTTGGTCGAAGTGGGGGTATGAGTCAACAGAAAGAGGCAAAACGCTTCCTAAACGCCCTCAATAAGCAATCGGAATTGGAACAGAAAGATTGTTTTTCAGTATCTGAAATATACAGTCTCGCTGATAGGATTTCCTTGAAAGTTCCTGATGTTGACACTTTCATCGATAATTTAAACAGCGTTGGTTTTCTCCTAAAAAAAGGACCCAAGACATATCAGGTGTTATCCTCCTCTTATTCACGAAGCCAATCATTTAGTACAAGGGGCTAA 2385 0.4197 MEERIGYGFGSISMDPFGLLDILEIYFPQQLFTVEETWLNLTSSLLSFFSSQPGQGQNLASQVKNDYGNYVLSLDLHQLKQICHVEEFYEMLMEKPKIALLCMSAAVHKVLLSIWENDMLELSGKVFIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECGKCKQRITRMFPDGKFSPPSTCNLNGCKSKIFNPLRPTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLETVSIKNSKSQSIPEDLQDSNPKARPTELFDLFSFSSKDLEFVVKFAEEHGPDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTRAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAGQHSPALKKRRGVAASQNADGVGLGVRSGSLISRLRLDPHRDSDFVPLPVQLLRKYIAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADGTPITARQLESLLRLAEARARLDLRVEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDVDTFIDNLNSVGFLLKKGPKTYQVLSSSYSRSQSFSTRG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4578g00006 794 CDD MCM8 350 692 - -
Gabi4578g00006 794 Gene3D - 324 703 IPR027417 -
Gabi4578g00006 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 449 463 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 527 535 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 389 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 500 512 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 PRINTS Mini-chromosome maintenance (MCM) protein family signature 476 489 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 Gene3D - 167 217 - -
Gabi4578g00006 794 CDD MCM8_WHD 715 780 - -
Gabi4578g00006 794 SMART mcm 136 694 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 69 731 IPR031327 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 699 IPR027417 -
Gabi4578g00006 794 Pfam MCM AAA-lid domain 610 693 IPR041562 -
Gabi4578g00006 794 SUPERFAMILY Nucleic acid-binding proteins 67 270 IPR012340 -
Gabi4578g00006 794 ProSiteProfiles MCM family domain profile. 346 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 Pfam MCM P-loop domain 343 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Gabi4578g00006 794 Coils Coil 461 481 - -
Gabi4578g00006 794 Gene3D - 140 269 IPR012340 -
Gabi4578g00006 794 Pfam MCM OB domain 140 268 IPR033762 -
Gabi4578g00006 794 SMART AAA_5 390 542 IPR003593 GO:0016887
Gabi4578g00006 794 FunFam DNA helicase MCM8 isoform X1 167 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4578g00006 Gabi-Chr4578 57722 64857 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4578g00006 7 780 Core DNA Replication Machinery Family AT3G09660 72.010 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4578g00006 K10737 - gmx:100784549 1348.57