Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4578g00003 ATGTTGGATCTCAATCTCAACGCTGATTCTGCATCCCTCAACAACATTCTTCCTCTCTCCGGCAGCCAAATGGAAAGCTCCGGCAGCTTCAACTCCTCCGTTGTCAATGCCGCCGACACCGAAGATTCTTGCTCTTTCGGCGATGCCTTTGCTTACAACTTCGCCATACTCAACAATAACGCCGTCGATGACGCCGCCACCTCCAAACAGCTTCAGCTTCCCGGAGTTGGAATCGGAGACGCTTGTGTTCGGACCATCCAGCTTTTTCCGGCCGCCGAGTTGGGAATCTCGTCGTCTGGAAGTAAGGGATGGTTGGATTTGCCGTCGAAGGAGGTGGATCATCACGGTGGTGTGCCGGAGCAGAGGATTGTTCCGCTGCAGCAACCGCAGGTGAAGAAGAGCCGTCGTGGACCGAGGTCGCGGAGCTCGCAGTATCGCGGAGTTACTTTCTATCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAACAAGTGTACTTGGGTGGATTTGACACAGCGCATGCTGCAGCTAGGGCATATGATCGAGCTGCAATCAAGTTCCGTGGCGTTGATGCTGATATCAATTTCAACGTCAGCGATTATGATGAAGATATGAAGCAGATGAGTAACTTCACAAAGGAAGAGTTTGTTCATATTCTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTTCATAAATGTGGGCGATGGGAAGCTCGTATGGGGCAGTTTCTCGGGAAAAAATATATATATCTTGGGCTATTCGATAGCGAACTAGAGGCTGCGAGAGCGTATGATAAGGCTGCTATAAAATGCAATGGAAGGGAAGCTGTTACAAACTTTGAGGCCAGCTTATATGAAGGGGAGTTAATTTCTCAGTCTGATAATGAAGATAACAAGCAAAGTCTCGATCTGAGCTTGGGCATAGCTCCCCCTTCTTACTCTGATGGTCAAATCAAGAACATACACGACAATGGGAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATTCCTGTCGATACGAGAGTTATGTTTGAGCACTCTGGGACAAGATCACTGAAGGTTCGGTCATCCGATGGCTTCTCCATAGCATCTGAGTATCCTTCAGGCTGGAATGATGCCAATTTCTTTCCCATCTGTAAGGAAAGAGCAATAGAGAAGAGGATGGAAGTTGCTCCCTTGCCAAATTGGGCATGGCAAGTTCAAGGTCCTTATGGCGGGGCAACTCTGACTCCACCGTTCTCTGCTGCAGCATCATCAGGATTCCCTTCATCAATAATACCATCAGCTGCGGATAGTCAAATTCATTTTCCAAACGTGACGTTCCTCCCCCCTCATTTTCCTCCATCAATCACTAACCCCAGCACCGTACCCCATTTCTACTGCAGGAGCTGA 1431 0.4878 MLDLNLNADSASLNNILPLSGSQMESSGSFNSSVVNAADTEDSCSFGDAFAYNFAILNNNAVDDAATSKQLQLPGVGIGDACVRTIQLFPAAELGISSSGSKGWLDLPSKEVDHHGGVPEQRIVPLQQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDMKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDKAAIKCNGREAVTNFEASLYEGELISQSDNEDNKQSLDLSLGIAPPSYSDGQIKNIHDNGSGLQVQRSWDDIPVDTRVMFEHSGTRSLKVRSSDGFSIASEYPSGWNDANFFPICKERAIEKRMEVAPLPNWAWQVQGPYGGATLTPPFSAAASSGFPSSIIPSAADSQIHFPNVTFLPPHFPPSITNPSTVPHFYCRS 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4578g00003 476 ProSiteProfiles AP2/ERF domain profile. 144 200 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 SUPERFAMILY DNA-binding domain 235 295 IPR016177 GO:0003677
Gabi4578g00003 476 SUPERFAMILY DNA-binding domain 143 202 IPR016177 GO:0003677
Gabi4578g00003 476 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 Pfam AP2 domain 144 192 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 Pfam AP2 domain 235 285 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 CDD AP2 235 295 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 ProSiteProfiles AP2/ERF domain profile. 236 293 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 110 319 - -
Gabi4578g00003 476 SMART rav1_2 144 206 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 SMART rav1_2 236 299 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 FunFam AP2-like ethylene-responsive transcription factor 143 202 - -
Gabi4578g00003 476 FunFam AP2-like ethylene-responsive transcription factor 235 295 - -
Gabi4578g00003 476 CDD AP2 144 202 IPR001471 GO:0003700|GO:0006355
Gabi4578g00003 476 Gene3D AP2/ERF domain 235 294 IPR036955 GO:0003700|GO:0006355
Gabi4578g00003 476 Gene3D AP2/ERF domain 143 202 IPR036955 GO:0003700|GO:0006355
Gabi4578g00003 476 MobiDBLite consensus disorder prediction 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4578g00003 Gabi-Chr4578 17573 20084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4578g00003 123 319 AP2-EREBP Transcription Factor Family AT4G36920 80.500 2.19e-95 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi4578g00003 AP2 1.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4578g00003 K09284 - gmx:100797238 689.108