Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4578g00002 ATGGCCGCAGCAGCTCGCCCTCTGGTCTCTGTTCAATCCATGGAGGGCGACGCGGCGGCACCCACCATCCCACTGCCTCATGTGATGAAGGCGTCAATTCGACCCGACATCGTCACCTTCGTTCACTCCAACATTTCCCGAAACAGCCGCCAACCCTACGCCGTCAGCAGGCGCGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGCACCGGCCGTGCAGTCTCCCGTATCCCCCGAGTCCCCGGCGGCGGAACCCACCGCGCCGGCCAGGGAGCCTTCGGCAACATGTGCCGCGGCGGTCGCATGTTCGCTCCCACCAAGATCTGGCGACGCTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTCGTCTCCGCCATCGCCGCCTCCGCTATCCCCTCACTCGTTCAGGCCCGCGGTCACAAAATCGAGTCAGTCCCGGAGCTTCCTCTTGTAGTCAGTGACTCCATGGAAGCAATGGAGAAAAGCAAGGAAGCGGTGAAGGTTCTGAAGCAAATTGGCGCTTTCCCAGACGCTGAGAAAGCGAAGGACAGCCATGGCATTCGATCAGGGAAGGGGAAGATGAGGAACCGAAGGTACATTTCACGCAAGGGTCCTCTTATTGTGTACGGAACTGAAGGAGCCAAAGCCGTGAAAGCTTTCAGGAACATTCCAGGTGTTGAGGTGGCGAATGTTGAGAGGCTGAACCTTCTGAAGTTGGCACCGGGTGGTCACCTTGGAAGGTTCATTATATGGACTAAGTCTGCGTTTGAGAAACTTGACTCCATATATGGGTCATTCGAGAAGGCTTCTGAGAAGAAGAATGGTTACCTGCTTCCCAGGTCAAAGATGGTAAACTCGGACCTCGCCAGGATCATTAACTCTGATGAGGTTCAGTCTGTGGTTAGGCCCATTAACAAGGAGGTTAAGAGGGCTACACTCAAGAAGAACCCCCTCAAGAATCTCAATGTTATGTTGAGGCTCAATCCCTATGCCAAAACAGCAAAGAGGATGTCACTTCTCGCTGAGTCACAGCGCGTCAAAGCTAAGAAGGAGCTTCTCCACAAGAAGCGCAACACTGTCCCCAAGGCTGCTGCTGCTACCAAGGCTGCTGGAAAATCATGGTATCAAACCATGGTCTCCGACTCTGACTATGCTGAATTTGACAACTTTTCTAAGTGGTTGGGTGTTTCCCAGTGA 1206 0.5498 MAAAARPLVSVQSMEGDAAAPTIPLPHVMKASIRPDIVTFVHSNISRNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVQARGHKIESVPELPLVVSDSMEAMEKSKEAVKVLKQIGAFPDAEKAKDSHGIRSGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFEKASEKKNGYLLPRSKMVNSDLARIINSDEVQSVVRPINKEVKRATLKKNPLKNLNVMLRLNPYAKTAKRMSLLAESQRVKAKKELLHKKRNTVPKAAAATKAAGKSWYQTMVSDSDYAEFDNFSKWLGVSQ 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4578g00002 401 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
Gabi4578g00002 401 MobiDBLite consensus disorder prediction 51 93 - -
Gabi4578g00002 401 FunFam 60S ribosomal protein L4 3 305 - -
Gabi4578g00002 401 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gabi4578g00002 401 Gene3D - 3 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gabi4578g00002 401 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Gabi4578g00002 401 MobiDBLite consensus disorder prediction 51 70 - -
Gabi4578g00002 401 PANTHER 60S RIBOSOMAL PROTEIN L4 4 394 IPR045240 -
Gabi4578g00002 401 Pfam 60S ribosomal protein L4 C-terminal domain 278 349 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4578g00002 Gabi-Chr4578 4286 6307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4578g00002 2 401 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 79.901 0.0 661
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4578g00002 K02930 - gmx:100779764 698.353