Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4574g00008 ATGGTGATCTTAAACCTTGGGAGGAAGAAGGAGAGTCAAGGAAATCGACTTGGGAAATATGTATTGGGTAGGACTCTTGGGGAAGGTAATTTTGGAAAAGTCAAGTTGGCTAGGAACACAGATTCTGGACAACTTTTTGCTATTAAGATCCTTGACAAAAACAAAGTCATTGATCTCAATAACGCTGATCAGATAAAGAGGGAAATATCCACCTTGAAGCTCCTCAAGCATCCGAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAATCCAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGATAAAATTTCATCCAAAGGTAAACTTTCAGAAGCTGATGGCAGGAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTAGAGAATGTACTACTGGATACCAAAGGGAACATAAAAATAACCGATTTTAACCTTAGTGCTTTGCCTCAGCATATTAAGGCAGATGGGTTGCTACATACAACATGTGGAAGTCCCAACTATATTGCACCTGAAATTCTTGCTAATAGAGGCTATGATGGTGCAAAATCAGATGTATGGTCATGTGGTGTTCTCTTGTATGTAATTCTAACAGGATACCTTCCTTTTGATGACAGAAACCTTGCAGTTCTCTATCAAAAGATATTGAAAGGAGATTGTCAGATACCAAAATGGCTATCACCTGGTGCTCAGAACATTATAAAGAGGATTCTTGATCCCAATCCTAAAACCAGGATATCAATGGCTATGATCAAAGAAAATGAATGGTTCAAGGAGGGTTATACTCCTGCAAATCCAGATGATGAGGAAGAGGATGCATATATTGATGATGAAGCCTTTTCCATCCAGGAAGTGGTATACTTGCCACTTGAATCACAAGGAGGGAGTCCTGGATCACCAACACTTATCAACGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCGGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTTACATCAAACCATTCACCAAAAGATTTGATTGAGAGGATTGAGGACATTGTAACAGAAATGGGATTTAGAGTCCAGAAGAAAAATGGAAAGGAGAACAAAGCACAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTTTTTGAAATAAGCCCATCCTTGCGTGTAGTAGAATTAAGGAAGTCTTACGGAGATGCTTCTGTATATAGACAGTTATGCAAGAAGTTATCAAATGATTTGGGTGATCACCAAACGCAGCAGTTAGTGAACTCAGAAGATATAGGCCTGTTAGAAAAGAATTTAGAAGCCAGTTAA 1368 0.3955 MVILNLGRKKESQGNRLGKYVLGRTLGEGNFGKVKLARNTDSGQLFAIKILDKNKVIDLNNADQIKREISTLKLLKHPNVVRLYEVLASKSKIYMVLEYVNGGELFDKISSKGKLSEADGRKLFQQLIDGVSYCHNKGVFHRDLKLENVLLDTKGNIKITDFNLSALPQHIKADGLLHTTCGSPNYIAPEILANRGYDGAKSDVWSCGVLLYVILTGYLPFDDRNLAVLYQKILKGDCQIPKWLSPGAQNIIKRILDPNPKTRISMAMIKENEWFKEGYTPANPDDEEEDAYIDDEAFSIQEVVYLPLESQGGSPGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSPKDLIERIEDIVTEMGFRVQKKNGKENKAQKSLGSLSVAAEVFEISPSLRVVELRKSYGDASVYRQLCKKLSNDLGDHQTQQLVNSEDIGLLEKNLEAS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4574g00008 455 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gabi4574g00008 455 Coils Coil 445 455 - -
Gabi4574g00008 455 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Gabi4574g00008 455 Pfam NAF domain 318 377 IPR004041 GO:0007165
Gabi4574g00008 455 FunFam Non-specific serine/threonine protein kinase 318 435 - -
Gabi4574g00008 455 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Gabi4574g00008 455 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00008 455 CDD CIPK_C 322 433 - -
Gabi4574g00008 455 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00008 455 FunFam Non-specific serine/threonine protein kinase 13 312 - -
Gabi4574g00008 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 420 - -
Gabi4574g00008 455 Gene3D Transferase(Phosphotransferase) domain 1 10 311 - -
Gabi4574g00008 455 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Gabi4574g00008 455 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00008 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gabi4574g00008 455 Gene3D Kinase associated domain 1, KA1 316 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4574g00008 Gabi-Chr4574 35629 40271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4574g00008 83 438 CBL-interacting serine-threonine protein kinases AT3G17510 69.337 4.23e-175 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4574g00008 Pkinase 1.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4574g00008 K07198 - gmx:100815660 718.383