Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi4574g00006 ATGGTGATCTTAAACCTTGGGAGGAAGAAGGAGAGTCAAGGAAATCGACTTGGGAAATATGTATTGGGTAGGACTCTTGGGGAAGGTAATTTTGGAAAAGTCAAGTTGGCTAGGAACACAGATTCTGGACAACTTTTTGCTATTAAGATCCTTGACAAAAACAAAGTCATTGATCTCAATAACGCTGATCAGATAAAGAGGGAAATATCCACCTTGAAGCTCCTCAAGCATCCGAACGTTGTTAGATTATACGAGGTCTTGGCTAGCAAATCCAAAATTTATATGGTACTTGAGTACGTGAATGGAGGAGAGTTATTTGATAAAATTTCATCCAAAGGTAAACTTTCAGAAGCTGATGGCAGGAAGTTGTTCCAACAGTTGATTGATGGTGTGAGCTACTGCCACAATAAAGGTGTCTTCCACAGGGATCTCAAGCTAGAGAATGTACTACTGGATACCAAAGGGAACATAAAAATAACCGATTTTAACCTTAGTGCTTTGCCTCAGCATATTAAGGCAGATGGGTTGCTACATACAACATGTGGAAGTCCCAACTATATTGCACCTGAAATTCTTGCTAATAGAGGCTATGATGGTGCAAAATCAGATGTATGGTCATGTGGTGTTCTCTTGTATGTAATTCTAACAGGATACCTTCCTTTTGATGACAGAAACCTTGCAGTTCTCTATCAAAAGATATTGAAAGGAGATTGTCAGATACCAAAATGGCTATCACCTGGTGCTCAGAACATTATAAAGAGGATTCTTGATCCCAATCCTAAAACCAGGATATCAATGGCTATGATCAAAGAAAATGAATGGTTCAAGGAGGGTTATACTCCTGCAAATCCAGATGATGAGGAAGAGGATGCATATATTGATGATGAAGCCTTTTCCATCCAGGAACCACTTGAATCACAAGGAGGGAGTCCTGGATCACCAACACTTATCAACGCATTTCAGTTGATAGGGATGTCTTCATGCTTAGACCTCTCGGGCTTTTTTGAGAAAGAGGATGTCTCTGAGAGGAAGATAAGATTTACATCAAACCATTCACCAAAAGATTTGATTGAGAGGATTGAGGACATTGTAACAGAAATGGGATTTAGAGTCCAGAAGAAAAATGGAAAGTTGAAAGTGATACAGGAGAACAAAGCACAGAAAAGTCTAGGTAGCCTCTCAGTGGCAGCAGAGGTTTTTGAAATAAGCCCATCCTTGCGTGTAGTAGAATTAAGGAAGTCTTACGGAGATGCTTCTGTATATAGACAGTTATGCAAGAAGTTATCAAATGATTTGGGTGATCACCAAACGCAGCAGTTAGTGAACTCAGAAGATATAGGCCTGTTAGAAAAGAATTTAGAAGCCAGTTAA 1371 0.3946 MVILNLGRKKESQGNRLGKYVLGRTLGEGNFGKVKLARNTDSGQLFAIKILDKNKVIDLNNADQIKREISTLKLLKHPNVVRLYEVLASKSKIYMVLEYVNGGELFDKISSKGKLSEADGRKLFQQLIDGVSYCHNKGVFHRDLKLENVLLDTKGNIKITDFNLSALPQHIKADGLLHTTCGSPNYIAPEILANRGYDGAKSDVWSCGVLLYVILTGYLPFDDRNLAVLYQKILKGDCQIPKWLSPGAQNIIKRILDPNPKTRISMAMIKENEWFKEGYTPANPDDEEEDAYIDDEAFSIQEPLESQGGSPGSPTLINAFQLIGMSSCLDLSGFFEKEDVSERKIRFTSNHSPKDLIERIEDIVTEMGFRVQKKNGKLKVIQENKAQKSLGSLSVAAEVFEISPSLRVVELRKSYGDASVYRQLCKKLSNDLGDHQTQQLVNSEDIGLLEKNLEAS 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi4574g00006 456 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gabi4574g00006 456 Pfam NAF domain 314 373 IPR004041 GO:0007165
Gabi4574g00006 456 FunFam Non-specific serine/threonine protein kinase 13 312 - -
Gabi4574g00006 456 CDD CIPK_C 318 434 - -
Gabi4574g00006 456 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Gabi4574g00006 456 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00006 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 421 - -
Gabi4574g00006 456 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00006 456 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi4574g00006 456 SUPERFAMILY Protein kinase-like (PK-like) 17 294 IPR011009 -
Gabi4574g00006 456 Gene3D Transferase(Phosphotransferase) domain 1 10 309 - -
Gabi4574g00006 456 FunFam Non-specific serine/threonine protein kinase 314 436 - -
Gabi4574g00006 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Gabi4574g00006 456 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Gabi4574g00006 456 Gene3D Kinase associated domain 1, KA1 312 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi4574g00006 Gabi-Chr4574 35629 40271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi4574g00006 83 439 CBL-interacting serine-threonine protein kinases AT3G17510 70.950 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi4574g00006 Pkinase 1.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi4574g00006 K07198 - gmx:100815660 729.939